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PP_0023DYG.1
Download
Download FASTA
Download metadata TSV
Kenya/PP_0023DYG.1/2012-05-16
C. N. Agoti,
J. R. Otieno,
P. K. Munywoki,
A. G. Mwihuri,
P. A. Cane,
D. J. Nokes,
P. Kellam,
M. Cotten &
M. L. Cotten
KEMRI Wellcome Trust Research Programme
Sample details
Collection date
2012-05-16
Sampling location
Kenya
Isolate name
Kilifi_9465_2_RSVB_2012
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2025-05-22 14:45
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Lineage
Lineage
B
INSDC
INSDC accession
KP317922.1
NCBI release date
2015-01-28
NCBI update date
2015-04-16
Host
Host
Homo sapiens
Submission details
Submission ID
KP317922.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-05-22 14:43:46 UTC
Date released
2025-05-22 14:48:23 UTC
Earliest release date
2015-01-28
Alignment and QC
Length
14941 (98.5%)
# of SNPs
467
# of inserted bases
7
# of deleted bases
61
Nucleotide mutations
Mutations called relative to the
OP975389.1
reference
Substitutions
C
3
G
T
48
C
A
56
G
C
72
T
G
104
A
T
110
C
T
266
C
A
338
G
A
371
G
C
468
A
T
471
C
G
505
T
G
513
T
A
517
G
G
579
A
T
592
C
T
620
C
C
739
T
Show more
Deletions
973, 5399-5458
Insertions
ins_5119:CCAAAA, ins_7582:C
Amino acid mutations
Mutations called relative to the
OP975389.1
reference
Substitutions
F
F:
L
45
F
F:
K
65
Q
F:
K
68
N
F:
V
103
I
F:
Y
117
H
F:
Q
172
L
F:
L
173
S
F:
R
191
K
F:
M
206
I
F:
R
209
Q
G
G:
N
4
D
G:
A
74
I
G:
T
89
S
G:
A
107
T
G:
T
131
A
G:
G
135
S
G:
T
136
R
G:
I
137
T
G:
S
138
T
G:
T
198
I
G:
D
213
N
G:
L
217
P
G:
T
220
P
G:
I
227
T
G:
N
228
Y
G:
D
241
Y
G:
P
245
S
G:
V
249
M
Show more
L
L:
I
56
L
L:
Y
177
H
L:
C
195
Y
L:
Y
254
H
L:
I
445
V
L:
V
715
I
L:
N
943
S
L:
G
1250
S
L:
A
1479
V
L:
K
1663
N
L:
A
1712
T
L:
V
1716
M
L:
G
1735
R
L:
S
1736
N
L:
E
1787
A
L:
K
1844
R
L:
I
1932
V
L:
T
1987
I
L:
A
2119
V
M2-1
M2-1:
S
142
N
M2-1:
I
181
V
M2-2
M2-2:
I
2
T
M2-2:
K
34
N
M2-2:
C
49
Y
M2-2:
D
81
G
N
N:
V
97
I
N:
Y
216
H
N:
T
372
A
NS1
NS1:
I
105
M
NS1:
H
138
N
NS1:
S
139
P
P
P:
N
61
T
P:
I
62
V
P:
A
77
T
SH
SH:
G
2
V
SH:
I
49
A
SH:
D
64
N
Deletions
G
G:252-271
Insertions
G
ins_G:158:PK
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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