PP_001ZNST.1

Display Name: USA/PP_001ZNST.1/2025-03-12
Kunerth, H. D.; Plumb, M.; Namugenyi, S.; Evans, D.; Bohnkers-Voels, L.; Strain, A.

Submission details

Submission ID
PV546093.1
Submitting group
Date submitted
2025-05-22 14:42:50 UTC
Date released
2025-05-22 15:12:24 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-05-22 14:43insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

INSDC

BioProject accession
BioSample accession
INSDC accession
Raw reads accession
NCBI release date
2025-04-27
NCBI update date
2025-04-27

Alignment and QC metrics

Completeness
98.14%
Length
15045
Total ambiguous nucs
1
Total deleted nucs
2
Total frame shifts
0
Total inserted nucs
0
Total SNPs
229
Total unknown nucs
104

Sample details

Earliest release date
2025-04-27
Collection subdivision level 1
Minnesota
Collection country
USA
Collection date
2025-03-12
Collection date (lower bound)
2025-03-12
Collection date (upper bound)
2025-03-12
Isolate name
MN-MDH-RSVA-02757

Host

Host name - scientific
Homo sapiens
Host taxon ID

Lineage

Lineage
A.D.1.6

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions

  • C90T
  • C183T
  • G198A
  • A219G
  • A272G
  • A303T
  • C360T
  • A399G
  • T497C
  • G551A
  • G555A
  • G664A
  • T697C
  • G747A
  • G755A
  • G1000A
  • C1012T
  • T1035A
    • Deletions
    4175, 4592
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the PP109421.1 reference

    Substitutions

    F

  • F:A23T
  • F:V296I

    • G

  • G:P71L
  • G:H90Y
  • G:L101F
  • G:G106E
  • G:P120L
  • G:S121I
  • G:I134K
  • G:L142S
  • G:P143S
  • G:S144N
  • G:P217S
  • G:G224E
  • G:K240N
  • G:N242T
  • G:S243I
  • G:K262E
  • G:I265L
  • G:D284G

    • L

  • L:N143D
  • L:P171L
  • L:T179S
  • L:R256K
  • L:Y598H
  • L:M1225I
  • L:L1438Q
  • L:T1489N
  • L:I1653V
  • L:K1661N
  • L:H1690Y
  • L:T1712S
  • L:N1719Y
  • L:N1723S
  • L:N1724D
  • L:E1725G
  • L:G1731D
  • L:Y2163N

    • M

  • M:M43I

    • M2-1

  • M2-1:S176P

    • M2-2

  • M2-2:Y26C
  • M2-2:S46N

    • N

  • N:V352A

    • NS1

  • NS1:N68S

    • NS2

  • NS2:R50K
  • NS2:D53N

    • P

  • P:L55P

    • SH

  • SH:I38S
    • Deletions
    None
    Insertions
    None

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