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Status
PP_001ZM9V.1
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Display Name: USA/PP_001ZM9V.1/2025-03-22
H. D. Kunerth,
M. Plumb,
S. Namugenyi,
D. Evans,
L. Bohnkers-Voels &
A. Strain
Submission details
Submission ID
PV546042.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-05-22 14:42:50 UTC
Date released
2025-05-22 15:12:24 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2025-05-22 14:43
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Authors
Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab
INSDC
BioProject accession
PRJNA1048457
BioSample accession
SAMN48059153
INSDC accession
PV546042.1
Raw reads accession
SRR33217075
NCBI release date
2025-04-27
NCBI update date
2025-04-27
Alignment and QC metrics
Completeness
94.79%
Length
15048
Total ambiguous nucs
2
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
1
Total SNPs
206
Total unknown nucs
613
Sample details
Earliest release date
2025-04-27
Collection subdivision level 1
Minnesota
Collection country
USA
Collection date
2025-03-22
Collection date (lower bound)
2025-03-22
Collection date (upper bound)
2025-03-22
Isolate name
MN-MDH-RSVA-02706
Host
Host name - scientific
Homo sapiens
Host taxon ID
9606
Lineage
Lineage
A.D.3.3
Nucleotide mutations
Mutations called relative to the
PP109421.1
reference
Substitutions
C
90
T
C
183
T
T
195
C
A
354
G
G
587
T
G
670
T
G
1034
A
G
1050
A
G
1077
A
T
1137
C
T
1218
C
T
1326
C
T
1359
C
G
1368
A
T
1413
A
T
1422
C
A
1599
C
C
1788
T
Show more
Deletions
None
Insertions
ins_3154:A
Amino acid mutations
Mutations called relative to the
PP109421.1
reference
Substitutions
F
F:
T
12
I
G
G:
P
71
L
G:
I
75
V
G:
H
90
Y
G:
L
101
F
G:
T
113
I
G:
L
115
P
G:
V
131
D
G:
I
134
K
G:
N
178
G
G:
K
204
N
G:
G
224
E
G:
G
232
E
G:
S
243
I
G:
H
258
Q
G:
K
262
E
G:
I
265
L
G:
H
266
L
G:
P
274
L
G:
D
284
G
G:
E
308
K
L
L:
P
171
L
L:
K
180
R
L:
R
256
K
L:
Y
598
H
L:
L
835
M
L:
E
1322
K
L:
L
1438
Q
L:
N
1723
S
L:
E
1725
G
L:
G
1731
D
M2-1
M2-1:
P
120
L
M2-1:
S
176
P
M2-1:
T
180
A
M2-2
M2-2:
Y
26
C
M2-2:
S
46
N
M2-2:
H
47
Y
M2-2:
T
79
A
N
N:
V
352
A
NS2
NS2:
E
24
D
P
P:
L
55
P
P:
V
73
I
P:
T
92
M
Deletions
None
Insertions
None
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