PP_001ZLM5.1

Display Name: USA/PP_001ZLM5.1/2025-03-25
Kunerth, H. D.; Plumb, M.; Namugenyi, S.; Evans, D.; Bohnkers-Voels, L.; Strain, A.

Submission details

Submission ID
PV546020.1
Submitting group
Date submitted
2025-05-22 14:42:50 UTC
Date released
2025-05-22 15:12:24 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-05-22 14:43insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

INSDC

BioProject accession
BioSample accession
INSDC accession
Raw reads accession
NCBI release date
2025-04-27
NCBI update date
2025-04-27

Alignment and QC metrics

Completeness
91.71%
Length
15050
Total ambiguous nucs
2
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
3
Total SNPs
203
Total unknown nucs
1082

Sample details

Earliest release date
2025-04-27
Collection subdivision level 1
Minnesota
Collection country
USA
Collection date
2025-03-25
Collection date (lower bound)
2025-03-25
Collection date (upper bound)
2025-03-25
Isolate name
MN-MDH-RSVA-02684

Host

Host name - scientific
Homo sapiens
Host taxon ID

Lineage

Lineage
A.D.3.3

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions

  • C90T
  • C183T
  • T261C
  • C300T
  • A354G
  • A429T
  • T501C
  • T560C
  • A577G
  • G587T
  • G1034A
  • G1050A
  • G1077A
  • T1137C
  • T1218C
  • T1326C
  • T1359C
  • G1368A
    • Deletions
    None
    Insertions
    ins_3154:A, ins_15115:TT

    Amino acid mutations

    Mutations called relative to the PP109421.1 reference

    Substitutions

    F

  • F:T12I

    • G

  • G:P71L
  • G:H90Y
  • G:L97F
  • G:L101F
  • G:T113I
  • G:V131D
  • G:I134K
  • G:N178G
  • G:K204N
  • G:G224E
  • G:S243I
  • G:N255D
  • G:H258Q
  • G:K262E
  • G:I265L
  • G:H266L
  • G:E271K
  • G:P274L

    • L

  • L:P171L
  • L:K180N
  • L:R256K
  • L:S504T
  • L:Y598H
  • L:L835M
  • L:L1438Q
  • L:N1723S
  • L:E1725G
  • L:G1731D
  • L:I1741M

    • M2-1

  • M2-1:P120L
  • M2-1:S176P

    • M2-2

  • M2-2:Y26C
  • M2-2:S46N
  • M2-2:H47Y
  • M2-2:T79A

    • N

  • N:V352A

    • P

  • P:T92M

    • SH

  • SH:L30F
  • SH:C45S
    • Deletions
    None
    Insertions
    None

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