PP_001ZLJB.1

Display Name: USA/PP_001ZLJB.1/2025-03-27
Kunerth, H. D.; Plumb, M.; Namugenyi, S.; Evans, D.; Bohnkers-Voels, L.; Strain, A.

Submission details

Submission ID
PV546017.1
Submitting group
Date submitted
2025-05-22 14:42:50 UTC
Date released
2025-05-22 15:12:24 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-05-22 14:43insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

INSDC

BioProject accession
BioSample accession
INSDC accession
Raw reads accession
NCBI release date
2025-04-27
NCBI update date
2025-04-27

Alignment and QC metrics

Completeness
93.46%
Length
14858
Total ambiguous nucs
1
Total deleted nucs
1
Total frame shifts
0
Total inserted nucs
0
Total SNPs
208
Total unknown nucs
629

Sample details

Earliest release date
2025-04-27
Collection subdivision level 1
Minnesota
Collection country
USA
Collection date
2025-03-27
Collection date (lower bound)
2025-03-27
Collection date (upper bound)
2025-03-27
Isolate name
MN-MDH-RSVA-02681

Host

Host name - scientific
Homo sapiens
Host taxon ID

Lineage

Lineage
A.D.5.2

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions

  • C90T
  • C183T
  • T246C
  • T697C
  • A940C
  • A970G
  • A1009G
  • C1012T
  • A1021G
  • T1028C
  • G1042A
  • G1050A
  • A1051C
  • T1359C
  • G1368A
  • T1380C
  • G1395A
  • T1422C
    • Deletions
    4592
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the PP109421.1 reference

    Substitutions

    F

  • F:A103T
  • F:M115I
  • F:T122A

    • G

  • G:A57V
  • G:P71L
  • G:A79V
  • G:H90Y
  • G:L101F
  • G:I134K
  • G:P206Q
  • G:K209R
  • G:G224E
  • G:T235I
  • G:S243I
  • G:L248I
  • G:K262E
  • G:I265L
  • G:D284G
  • G:V303A
  • G:Y304H
  • G:L310P

    • L

  • L:P171L
  • L:R256K
  • L:Y598H
  • L:T1166I
  • L:D1306E
  • L:L1438Q
  • L:N1723G
  • L:E1725G
  • L:G1731D
  • L:A1927S
  • L:V1943Y

    • M

  • M:M73L

    • M2-1

  • M2-1:H22N
  • M2-1:S176P

    • M2-2

  • M2-2:S46N
  • M2-2:Q53L

    • N

  • N:V352A

    • P

  • P:L55P
  • P:V73I
  • P:S94N
    • Deletions
    None
    Insertions
    None

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