PP_001ZLCQ.1

Display Name: USA/PP_001ZLCQ.1/2025-03-13
Kunerth, H. D.; Plumb, M.; Namugenyi, S.; Evans, D.; Bohnkers-Voels, L.; Strain, A.

Submission details

Submission ID
PV546011.1
Submitting group
Date submitted
2025-05-22 14:42:50 UTC
Date released
2025-05-22 15:12:24 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-05-22 14:43insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

INSDC

BioProject accession
BioSample accession
INSDC accession
Raw reads accession
NCBI release date
2025-04-27
NCBI update date
2025-04-27

Alignment and QC metrics

Completeness
97.23%
Length
15046
Total ambiguous nucs
1
Total deleted nucs
3
Total frame shifts
0
Total inserted nucs
2
Total SNPs
235
Total unknown nucs
242

Sample details

Earliest release date
2025-04-27
Collection subdivision level 1
Minnesota
Collection country
USA
Collection date
2025-03-13
Collection date (lower bound)
2025-03-13
Collection date (upper bound)
2025-03-13
Isolate name
MN-MDH-RSVA-02675

Host

Host name - scientific
Homo sapiens
Host taxon ID

Lineage

Lineage
A.D.1

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions

  • C90T
  • C183T
  • G198A
  • C228T
  • G551A
  • C622T
  • G664A
  • T673C
  • T697C
  • A984T
  • G1000A
  • C1012T
  • C1047T
  • T1048C
  • G1050A
  • T1224C
  • T1312C
  • A1335G
    • Deletions
    565, 4177, 4592
    Insertions
    ins_15115:T, ins_3213:A

    Amino acid mutations

    Mutations called relative to the PP109421.1 reference

    Substitutions

    F

  • F:L111I

    • G

  • G:P71L
  • G:H90Y
  • G:L101F
  • G:S111F
  • G:P126S
  • G:I134K
  • G:L142S
  • G:S144G
  • G:R151H
  • G:G224V
  • G:S243I
  • G:T245N
  • G:L247P
  • G:K262E
  • G:E263G
  • G:I265L
  • G:Y280H
  • G:D284G

    • L

  • L:Y34F
  • L:N143D
  • L:P171L
  • L:T179S
  • L:R256K
  • L:Y598H
  • L:P1089S
  • L:L1438Q
  • L:N1723S
  • L:E1725G
  • L:G1731D
  • L:I1734V
  • L:S1745L

    • M

  • M:M43I
  • M:V153A

    • M2-1

  • M2-1:S176P

    • M2-2

  • M2-2:Y26C
  • M2-2:S46N

    • N

  • N:V97A
  • N:V352A

    • P

  • P:L55P
  • P:P77L
    • Deletions
    None
    Insertions
    None

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