PP_001ZKP2.1

Display Name: USA/PP_001ZKP2.1/2025-03-28
Kunerth, H. D.; Plumb, M.; Namugenyi, S.; Evans, D.; Bohnkers-Voels, L.; Strain, A.

Submission details

Submission ID
PV545988.1
Submitting group
Date submitted
2025-05-22 14:42:50 UTC
Date released
2025-05-22 15:12:24 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-05-22 14:43insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

INSDC

BioProject accession
BioSample accession
INSDC accession
Raw reads accession
NCBI release date
2025-04-27
NCBI update date
2025-04-27

Alignment and QC metrics

Completeness
93.29%
Length
15044
Total ambiguous nucs
1
Total deleted nucs
3
Total frame shifts
0
Total inserted nucs
0
Total SNPs
213
Total unknown nucs
842

Sample details

Earliest release date
2025-04-27
Collection subdivision level 1
Minnesota
Collection country
USA
Collection date
2025-03-28
Collection date (lower bound)
2025-03-28
Collection date (upper bound)
2025-03-28
Isolate name
MN-MDH-RSVA-02652

Host

Host name - scientific
Homo sapiens
Host taxon ID

Lineage

Lineage
A.D.5.1

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions

  • C90T
  • C183T
  • A327T
  • C624T
  • T697C
  • T826C
  • T868C
  • T905C
  • A940C
  • T977C
  • A1009G
  • C1012T
  • A1021G
  • T1028C
  • C1047T
  • G1050A
  • A1051C
  • T1359C
    • Deletions
    7516-7518
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the PP109421.1 reference

    Substitutions

    F

  • F:T122A

    • G

  • G:A57V
  • G:P71L
  • G:H90Y
  • G:L101F
  • G:T118I
  • G:S121G
  • G:I134K
  • G:T136I
  • G:P206Q
  • G:K209R
  • G:T220I
  • G:G224E
  • G:S243I
  • G:L248I
  • G:K262E
  • G:I265L
  • G:S277P
  • G:Y280H

    • L

  • L:S141P
  • L:P171L
  • L:R256K
  • L:Y598H
  • L:L1438Q
  • L:T1718I
  • L:N1723G
  • L:E1725G
  • L:G1731D
  • L:V1943D

    • M

  • M:M73L

    • M2-1

  • M2-1:S176P
  • M2-1:T184M

    • M2-2

  • M2-2:T2I
  • M2-2:Y26C
  • M2-2:S46N

    • N

  • N:Y216H
  • N:V352A
  • N:L382F

    • NS2

  • NS2:T9I

    • P

  • P:L55P

    • SH

  • SH:C45Y
    • Deletions
    None
    Insertions
    None

    Report an issue with this sequence or metadata

    Create GitHub issue