PP_001Z23S.1

Display Name: USA/PP_001Z23S.1/2024-11-29
J. Paull, K. Messer, G. Adams, D. Nabatanzi, S. Dobbins, C. Tomkins-Tinch, G. Mboowa, L. Luebbert, C. Worby, N. Wewior, P. Samani, K. DeRuff, B. Blumenstiel, G. Moreno, A. Earl, A. Gnirke, B. MacInnis, P. Sabeti, J. Lemieux & D. Park

Sample details

Collection date
2024-11-29
Country
USA
Admin level 1
Massachusetts
Isolate name
RSV-A/human/USA/MA-Broad_MGH-22622/2024

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-05-22 14:43insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
A.D.5.1

Authors

Author affiliations
Broad Institute of MIT and Harvard, Infectious Disease and Microbiome Program

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2025-03-11
NCBI update date
2025-03-11
Raw reads accession

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics

Length
14902
Completeness
86.84%
# of SNPs
212
# of inserted bases
6
# of deleted bases
4
# of ambiguous bases
0
# of unknown bases
1678
# of frame shifts
0
# of stop codons
0

Submission details

Submission ID
PV260437.1
Submitting group
Date submitted
2025-05-22 14:42:50 UTC
Date released
2025-05-22 15:11:22 UTC
Earliest release date
2025-03-11

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions

  • C90T
  • C183T
  • C431T
  • T697C
  • T922C
  • A940C
  • A1009G
  • C1012T
  • A1021G
  • T1028C
  • G1050A
  • A1051C
  • A1073G
  • G1079A
  • T1281C
  • T1359C
  • T1380C
  • G1383A
    • Deletions
    4592, 7516-7518
    Insertions
    ins_4104:AAAAC, ins_4174:A

    Amino acid mutations

    Mutations called relative to the PP109421.1 reference

    Substitutions

    F

  • F:T122A
  • F:N124T
  • F:S275F

    • G

  • G:A57V
  • G:P71L
  • G:H90Y
  • G:L101F
  • G:S102F
  • G:T118I
  • G:Q127L
  • G:I134K
  • G:P206Q
  • G:K209R
  • G:G224E
  • G:S243I
  • G:L248I
  • G:K253Q
  • G:K262E
  • G:I265L
  • G:G272S
  • G:Y273H

    • L

  • L:P171L
  • L:Y598H
  • L:L1438Q
  • L:N1530D
  • L:N1723G
  • L:K1727E
  • L:G1731D
  • L:Y1732C
  • L:N1916Y
  • L:V1943D

    • M

  • M:M73L

    • M2-1

  • M2-1:S176P
  • M2-1:H187N

    • M2-2

  • M2-2:S44N

    • N

  • N:Y216H
  • N:T340A
  • N:V352A

    • NS1

  • NS1:T121I

    • P

  • P:L55P
    • Deletions
    None
    Insertions
    None

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