PP_001YQQX.1

USA/PP_001YQQX.1/2024-11-20
J. Paull, K. Messer, G. Adams, D. Nabatanzi, S. Dobbins, C. Tomkins-Tinch, G. Mboowa, L. Luebbert, C. Worby, N. Wewior, P. Samani, K. DeRuff, B. Blumenstiel, G. Moreno, A. Earl, A. Gnirke, B. MacInnis, P. Sabeti, J. Lemieux & D. Park

Broad Institute of MIT and Harvard, Infectious Disease and Microbiome Program

Sample details

Collection date
2024-11-20
Sampling location
USA (Massachusetts)
Isolate name
RSV-A/human/USA/MA-Broad_MGH-22569/2024

Data use terms

Data use terms
OPEN
Data use terms URL

Lineage

Lineage
A.D.5.1

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2025-03-04
NCBI update date
2025-03-04
Raw reads accession

Host

Host

Submission details

Submission ID
PV178218.1
Submitting group
Date submitted
2025-05-22 14:42:50 UTC
Date released
2025-05-22 15:10:50 UTC
Earliest release date
2025-03-04

Alignment and QC

Length
15041 (98.8%)
# of SNPs
240
# of inserted bases
5
# of deleted bases
4

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions
  • T66A
  • A67G
  • C90T
  • C183T
  • C431T
  • T697C
  • T922C
  • A940C
  • A1009G
  • C1012T
  • A1021G
  • T1028C
  • G1050A
  • A1051C
  • A1073G
  • G1079A
  • T1281C
  • T1359C
Deletions
4592, 7516-7518
Insertions
ins_4104:AAAAC

Amino acid substitutions

Substitutions called relative to the PP109421.1 reference

Substitutions

F

  • F:T122A
  • F:N124T
  • F:S275F

G

  • G:A57V
  • G:P71L
  • G:H90Y
  • G:L101F
  • G:S102F
  • G:T118I
  • G:Q127L
  • G:I134K
  • G:P206Q
  • G:K209R
  • G:G224E
  • G:S243I
  • G:L248I
  • G:K253Q
  • G:K262E
  • G:I265L
  • G:G272S
  • G:Y273H

L

  • L:P171L
  • L:R256K
  • L:Y598H
  • L:L1438Q
  • L:N1530D
  • L:N1723G
  • L:K1727E
  • L:G1731D
  • L:Y1732C
  • L:S1745L
  • L:N1916Y
  • L:V1943D

M

  • M:M73L

M2-1

  • M2-1:S176P
  • M2-1:H187N

M2-2

  • M2-2:Y24C
  • M2-2:S44N
  • M2-2:Q68K

N

  • N:Y216H
  • N:V352A

NS1

  • NS1:T121I

P

  • P:L55P
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue