PP_001XSGE.1

USA/PP_001XSGE.1/2022-12-10
C. D. Frazar, J. Lee, E. Ryke, L. Gamboa, J. Opsahl, L. Rodriguez-Salas, E. McDermot, J. Stone, T. Kolar, P. D. Han, T. R. Sibley, M. Truong, D. Reinhart, S. Grindstaff, C. R. Wolf, M. Boeckh, J. A. Englund, B. R. Lutz, A. Waghmare, C. Viboud, L. M. Starita, J. Shendure, T. Bedford & H. Y. Chu

Seattle Flu Study, The Brotman Baty Institute for Precision Medicine

Sample details

Collection date
2022-12-10
Sampling location
USA (Washington,King County)
Isolate name
RSV-A/human/USA/WA-S25728/2022

Data use terms

Data use terms
OPEN
Data use terms URL

Lineage

Lineage
A.D.5.2

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2024-12-01
NCBI update date
2024-12-01

Host

Host

Submission details

Submission ID
PQ638679.1
Submitting group
Date submitted
2025-05-22 14:42:50 UTC
Date released
2025-05-22 15:09:48 UTC
Earliest release date
2024-12-01

Cited in

Alignment and QC

Length
15131 (99%)
# of SNPs
202
# of deleted bases
2
# of unknown bases
59

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions
  • C41T
  • T66A
  • A67G
  • C90T
  • C183T
  • T246C
  • T697C
  • A940C
  • A1009G
  • C1012T
  • A1021G
  • T1028C
  • G1050A
  • A1051C
  • A1078G
  • G1248A
  • T1254C
  • T1281C
Deletions
3213, 4592
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the PP109421.1 reference

Substitutions

F

  • F:K68E
  • F:A103T
  • F:T122A

G

  • G:L35F
  • G:A57V
  • G:P71L
  • G:H90Y
  • G:L101F
  • G:I134K
  • G:P206Q
  • G:K209R
  • G:G224E
  • G:S243I
  • G:L248I
  • G:K262E
  • G:I265L
  • G:G272D
  • G:D284G
  • G:V303A
  • G:Y304H
  • G:L310P

L

  • L:P171L
  • L:R256K
  • L:Y598H
  • L:G1143S
  • L:L1438Q
  • L:N1723G
  • L:E1725G
  • L:G1731D
  • L:K1753N
  • L:A1927T
  • L:V1943D

M

  • M:M73L

M2-1

  • M2-1:S176P

M2-2

  • M2-2:S44N

N

  • N:V352A

P

  • P:L55P
  • P:T69I
Deletions
N/A
Insertions
N/A

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