PP_001VU8Y.1

Canada/010203025/2020-01-08
A. C. Langedijk, R. J. Lebbink, L. J. Bont & A. Evers

UMC Utrecht, Paediatric Infectious Diseases

Sample details

Collection date
2020-01-08
Sampling location
Canada
Isolate name
010203025

Data use terms

Data use terms
OPEN
Data use terms URL

Lineage

Lineage
A.D.2.2

INSDC

INSDC accession
NCBI release date
2024-04-09
NCBI update date
2024-04-09

Host

Host

Submission details

Submission ID
PP376826.1
Submitting group
Date submitted
2025-05-22 14:41:42 UTC
Date released
2025-05-22 15:07:12 UTC
Earliest release date
2024-04-09

Alignment and QC

Length
15227 (100%)
# of SNPs
138
# of inserted bases
3
# of deleted bases
1

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions
  • T66A
  • A67G
  • C507T
  • C531T
  • A655G
  • C850T
  • G925A
  • C1036T
  • G1049A
  • G1050A
  • A1200T
  • T1287C
  • T1359C
  • A1455G
  • G1560A
  • T1644C
  • C1788T
  • C1806T
Deletions
4175
Insertions
ins_547:AA, ins_3183:G

Amino acid substitutions

Substitutions called relative to the PP109421.1 reference

Substitutions

F

  • F:A107T
  • F:S275F

G

  • G:A39V
  • G:P71L
  • G:H90Y
  • G:L101F
  • G:G224E
  • G:I265L
  • G:D284G
  • G:E287K
  • G:L314P

L

  • L:P171I
  • L:R256K
  • L:D1306V
  • L:L1438Q
  • L:N1723S
  • L:K1749R
  • L:V2129I

M

  • M:P44Q
  • M:M254I

M2-1

  • M2-1:S176P

M2-2

  • M2-2:Y24C
  • M2-2:N40S
  • M2-2:N43Y

N

  • N:V352A

P

  • P:L55P
Deletions
N/A
Insertions
N/A

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