PP_001VLQ7.1

Netherlands/310103063/2020-02-10
A. C. Langedijk, R. J. Lebbink, L. J. Bont & A. Evers

UMC Utrecht, Paediatric Infectious Diseases

Sample details

Collection date
2020-02-10
Sampling location
Netherlands
Isolate name
310103063

Data use terms

Data use terms
OPEN
Data use terms URL

Lineage

Lineage
A.D.5

INSDC

INSDC accession
NCBI release date
2024-04-09
NCBI update date
2024-04-09

Host

Host

Submission details

Submission ID
PP376570.1
Submitting group
Date submitted
2025-05-22 14:41:42 UTC
Date released
2025-05-22 15:06:40 UTC
Earliest release date
2024-04-09

Cited in

Alignment and QC

Length
15227 (100%)
# of SNPs
218
# of inserted bases
3
# of deleted bases
1

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions
  • T66A
  • A67G
  • C90T
  • C183T
  • A285C
  • C528T
  • C589T
  • A838G
  • A940C
  • A979T
  • A1009G
  • C1010T
  • C1012T
  • T1028C
  • G1050A
  • A1051C
  • T1359C
  • T1380C
Deletions
4592
Insertions
ins_7586:AAA

Amino acid substitutions

Substitutions called relative to the PP109421.1 reference

Substitutions

F

  • F:F22L
  • F:K68E
  • F:Y117H
  • F:T122A
  • F:V127A
  • F:S169N

G

  • G:P71L
  • G:H90Y
  • G:L101F
  • G:S102F
  • G:V131I
  • G:I134K
  • G:I141V
  • G:P206Q
  • G:K209M
  • G:K216N
  • G:G224E
  • G:V225A
  • G:S243I
  • G:L248I
  • G:K262E
  • G:I265L
  • G:P274L
  • G:D284G

L

  • L:P171L
  • L:R256K
  • L:K370N
  • L:R555K
  • L:Y598H
  • L:N603D
  • L:L1438Q
  • L:N1723G
  • L:E1725G
  • L:G1731D
  • L:I1741R
  • L:V1943D

M2-1

  • M2-1:S176P

M2-2

  • M2-2:Y24C
  • M2-2:S44N

N

  • N:V352A

P

  • P:E2D
  • P:L55P
  • P:I106M
  • P:V171I
Deletions
N/A
Insertions
N/A

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