PP_001TK4K.1

Display Name: USA/PP_001TK4K.1/2019-10-21
C. D. Frazar, J. Lee, E. Ryke, L. Gamboa, E. McDermot, J. Stone, T. Kolar, P. D. Han, T. R. Sibley, M. Truong, D. Reinhart, C. R. Wolf, M. Boeckh, J. A. Englund, B. R. Lutz, A. Waghmare, C. Viboud, L. M. Starita, J. Shendure, T. Bedford & H. Y. Chu

Sample details

Collection date
2019-10-21
Country
USA
Admin level 1
Washington, King County
Isolate name
RSV-A/human/USA/WA-S23227/2019

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-05-22 14:42insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
A.D.3

Authors

Author affiliations
The Brotman Baty Institute for Precision Medicine

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2023-08-26
NCBI update date
2023-08-26

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics

Length
15137
Completeness
99.08%
# of SNPs
175
# of inserted bases
2
# of deleted bases
0
# of ambiguous bases
0
# of unknown bases
50
# of frame shifts
0
# of stop codons
0

Submission details

Submission ID
OR287841.1
Submitting group
Date submitted
2025-05-22 14:41:42 UTC
Date released
2025-05-22 15:04:36 UTC
Earliest release date
2023-08-26

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions

  • T59C
  • T66A
  • A67G
  • C90T
  • C183T
  • G587T
  • C1012T
  • G1034A
  • G1050A
  • G1077A
  • T1359C
  • T1413A
  • T1422C
  • C1557T
  • C1788T
  • C1806T
  • T2165C
  • A2392G
    • Deletions
    None
    Insertions
    ins_3154:A, ins_15115:T

    Amino acid mutations

    Mutations called relative to the PP109421.1 reference

    Substitutions

    F

  • F:T12I

    • G

  • G:R15K
  • G:P71L
  • G:H90Y
  • G:L101F
  • G:T113I
  • G:V131D
  • G:I134K
  • G:N178G
  • G:G224E
  • G:G232E
  • G:S243I
  • G:H258Q
  • G:K262E
  • G:I265L
  • G:H266L
  • G:P274L
  • G:D284G
  • G:P298L

    • L

  • L:P171L
  • L:R256K
  • L:Y598H
  • L:L835M
  • L:L1438Q
  • L:N1723S
  • L:E1725G
  • L:G1731D
  • L:T1773M
  • L:V1941I

    • M2-1

  • M2-1:S176P

    • M2-2

  • M2-2:Y24C
  • M2-2:S44N
  • M2-2:T77A
  • M2-2:I85V

    • N

  • N:V352A

    • P

  • P:S39N
  • P:L55P
  • P:V73I
  • P:T92M
    • Deletions
    None
    Insertions
    None

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