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Status
PP_0015K6S.1
Download
Download FASTA
Download metadata TSV
Display Name: Portugal/PP_0015K6S.1/2025-03-05
Sobral,
Daniel; Cordeiro,
Rita; Coelho,
Luis; Ferreira,
Rita; Borges,
Vitor; Gomes,
Joao Paulo
Submission details
Submission ID
Monkeypox/PT0843/2025
Submitting group
Genomics and Bioinformatics Unit @ INSA, Portugal
Date submitted
2025-05-05 14:46:56 UTC
Date released
2025-05-05 14:48:35 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2025-05-05 14:46
daniel.sobral
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Authors
Author affiliations
Instituto Nacional de Saude Doutor Ricardo Jorge (INSA), Portugal
INSDC
Bioproject accession
PRJEB53055
Biosample accession
SAMEA118253469
INSDC accession
OZ256744.1
Raw reads accession
ERR14939454
Clade & Lineage
Clade
IIb
Lineage
E.3
Outbreak
hMPXV-1
Alignment and QC metrics
Completeness
98.12%
Length
197221
Total ambiguous nucs
0
Total deleted nucs
88
Total frame shifts
0
Total inserted nucs
100
Total SNPs
96
Total stop codons
0
Total unknown nucs
3702
Sample details
Earliest release date
2025-05-05
Collection country
Portugal
Collection date
2025-03-05
Collection date (lower bound)
2025-03-05
Collection date (upper bound)
2025-03-05
Host
Host name common
Human
Host name scientific
Homo sapiens
Host taxon id
9606
Sequencing
Sequencing date
2025-05-03
Sequencing instrument
Illumina NextSeq 550
Sequencing protocol
dx.doi.org/10.17504/protocols.io.5qpvob1nbl4o/v4
Nucleotide mutations
Mutations called relative to the
NC_063383.1
reference
Substitutions
G
1262
A
G
2591
A
G
3111
A
G
3522
A
C
3818
T
C
3987
T
C
7771
T
G
14000
T
G
15428
A
A
18769
G
C
21062
T
G
21723
A
C
23564
T
G
25661
A
T
28175
C
G
30367
A
G
31053
A
G
34459
A
Show more
Deletions
133177-133186, 174531-174536, 179172-179243
Insertions
ins_0:NNNNNNNNN, ins_197209:NNNNNNNNN, ins_133102:TT, ins_163214:AACT, ins_174076:NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Amino acid mutations
Mutations called relative to the
NC_063383.1
reference
Substitutions
OPG001
OPG001:
S
105
L
OPG002
OPG002:
S
54
F
OPG003
OPG003:
D
264
N
OPG016
OPG016:
R
84
K
OPG025
OPG025:
A
423
D
OPG036
OPG036:
M
1
I
OPG047
OPG047:
R
48
C
OPG053
OPG053:
P
78
S
OPG056
OPG056:
E
125
K
OPG057
OPG057:
E
353
K
OPG071
OPG071:
L
108
F
OPG072
OPG072:
D
56
N
OPG074
OPG074:
L
56
F
OPG074:
R
665
C
OPG084
OPG084:
E
375
K
OPG089
OPG089:
E
109
K
OPG092
OPG092:
D
196
N
OPG093
OPG093:
S
30
L
OPG093:
D
88
N
OPG094
OPG094:
S
80
L
OPG094:
M
142
I
OPG098
OPG098:
E
162
K
OPG105
OPG105:
S
734
L
OPG109
OPG109:
H
740
Y
OPG118
OPG118:
S
478
L
OPG118:
K
606
E
OPG123
OPG123:
P
615
S
OPG124
OPG124:
L
16
F
OPG133
OPG133:
M
580
I
OPG136
OPG136:
D
98
N
OPG139
OPG139:
A
17
T
OPG145
OPG145:
E
62
K
OPG145:
R
243
Q
OPG145:
E
435
K
OPG150
OPG150:
S
307
L
OPG164
OPG164:
S
7
L
OPG176
OPG176:
S
52
L
OPG176:
H
221
Y
OPG180
OPG180:
D
59
N
OPG193
OPG193:
L
263
F
OPG198
OPG198:
S
179
L
OPG210
OPG210:
D
209
N
OPG210:
P
722
S
OPG210:
M
1741
I
Deletions
None
Insertions
None
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