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Status
PP_0015G23.1
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Download metadata TSV
Display Name: Tajikistan/PP_0015G23.1/2023-05-26
D'Addiego,
J.; Mullojanova,
M.; Hikmatov,
T.; Tishkova,
F.; Hewson,
R.
Submission details
Submission ID
PV390627.1.L/PV390610.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-04-06 03:03:08 UTC
Date released
2025-04-06 03:03:40 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2025-04-06 03:03
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Authors
Author affiliations
UK Health Security Agency, Research & Evaluation
Alignment and QC metrics L
Completeness L
99.51%
Length L
12131
Total ambiguous nucs L
36
Total deleted nucs L
5
Total frame shifts L
0
Total inserted nucs L
51
Total SNPs L
1589
Total unknown nucs L
0
Alignment and QC metrics S
Completeness S
99.28%
Length S
1673
Total ambiguous nucs S
12
Total deleted nucs S
1
Total frame shifts S
0
Total inserted nucs S
2
Total SNPs S
210
Total unknown nucs S
0
Sample details
Earliest release date
2025-04-05
Collection country
Tajikistan
Collection date
2023-05-26
Collection date (lower bound)
2023-05-26
Collection date (upper bound)
2023-05-26
Isolate name
CCHFV_6_161
Host
Host name scientific
Hyalomma anatolicum
Host taxon id
176092
INSDC
INSDC accession L
PV390627.1
INSDC accession S
PV390610.1
NCBI release date
2025-04-05
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
L:
A
35
G
L:
G
43
C
L:
C
48
T
L:
C
59
T
L:
C
64
T
L:
T
65
G
L:
G
71
T
L:
A
72
T
L:
C
85
T
L:
G
88
A
L:
G
93
A
L:
A
109
G
L:
G
112
A
L:
T
121
C
L:
G
130
T
L:
T
131
A
L:
C
136
T
L:
T
151
C
Show more
S
S:
C
25
T
S:
G
54
A
S:
A
61
G
S:
C
64
T
S:
G
67
A
S:
T
79
C
S:
G
99
A
S:
A
118
G
S:
C
142
T
S:
T
157
C
S:
C
166
T
S:
C
178
A
S:
T
182
C
S:
C
187
T
S:
G
190
A
S:
G
196
A
S:
C
214
T
S:
C
217
T
Show more
Deletions
L:11930, L:11931, L:11996, L:12078, L:12084, S:1617
Insertions
ins_S:1579:A, ins_S:1612:C, ins_L:66:CC, ins_L:11924:GTG, ins_L:11922:T, ins_L:12108:A, ins_L:12056:ATTA, ins_L:12044:TCTATTTTAGTGCA, ins_L:12104:CAGTTTGATTATTTCTAGGGTGKGGG
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
NP
NP:
R
15
K
NP:
D
116
E
NP:
T
124
A
NP:
G
125
N
NP:
N
150
H
NP:
H
195
R
NP:
D
199
E
NP:
I
246
V
NP:
R
270
K
NP:
S
275
N
NP:
S
301
G
NP:
V
436
I
RdRp
RdRp:
S
6
N
RdRp:
S
19
T
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
V
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
L
90
V
RdRp:
M
112
I
RdRp:
I
114
V
RdRp:
T
163
A
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
A
202
V
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
K
275
R
Show more
Deletions
None
Insertions
None
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