PP_0015FVH.1

Display Name: Tajikistan/PP_0015FVH.1/2023-05-23
D'Addiego, J.; Mullojanova, M.; Hikmatov, T.; Tishkova, F.; Hewson, R.

Submission details

Submission ID
PV390620.1.M/PV390613.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-04-06 03:03:08 UTC
Date released
2025-04-06 03:03:40 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-04-06 03:03insdc_ingest_userOPEN
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data

Authors

Author affiliations
UK Health Security Agency, Research & Evaluation

Alignment and QC metrics M

Completeness M
37.42%
Length M
3673
Total ambiguous nucs M
17
Total deleted nucs M
0
Total frame shifts M
0
Total inserted nucs M
1
Total SNPs M
330
Total unknown nucs M
1647

Alignment and QC metrics S

Completeness S
54.84%
Length S
919
Total ambiguous nucs S
1
Total deleted nucs S
0
Total frame shifts S
0
Total inserted nucs S
0
Total SNPs S
112
Total unknown nucs S
1

Sample details

Earliest release date
2025-04-05
Collection country
Tajikistan
Collection date
2023-05-23
Collection date (lower bound)
2023-05-23
Collection date (upper bound)
2023-05-23
Isolate name
CCHFV_23_178

Host

Host name scientific
Hyalomma anatolicum
Host taxon id
176092

INSDC

INSDC accession M
PV390620.1
INSDC accession S
PV390613.1
NCBI release date
2025-04-05

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

M

  • M:A1662G
  • M:T1667C
  • M:A1679G
  • M:A1682G
  • M:A1688G
  • M:A1694G
  • M:A1709G
  • M:G1712A
  • M:C1715T
  • M:G1719A
  • M:C1721T
  • M:C1724T
  • M:C1736T
  • M:G1739A
  • M:C1760T
  • M:C1766T
  • M:A1773G
  • M:A1778G

    • S

  • S:G429A
  • S:A439G
  • S:C445T
  • S:T446C
  • S:G448C
  • S:A460G
  • S:C478T
  • S:C484A
  • S:C487T
  • S:A490G
  • S:T496C
  • S:C497T
  • S:G499A
  • S:A503C
  • S:C505T
  • S:A508G
  • S:C514T
  • S:G538A
    • Deletions
    None
    Insertions
    ins_M:5171:C

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    GPC

  • GPC:S524G
  • GPC:G543S
  • GPC:I561V
  • GPC:R579K
  • GPC:N592S
  • GPC:V598T
  • GPC:Y606F
  • GPC:R609K
  • GPC:T633S
  • GPC:K669N
  • GPC:A710V
  • GPC:I717V
  • GPC:R724K
  • GPC:L725F
  • GPC:I778M
  • GPC:V787I
  • GPC:T1369S
  • GPC:S1380A

    • NP

  • NP:N150H
  • NP:H195R
  • NP:D199E
  • NP:V205I
  • NP:L235F
  • NP:I246V
  • NP:R270K
  • NP:S275N
  • NP:S301G
    • Deletions
    None
    Insertions
    None

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