PP_0015FUK.1

Display Name: Tajikistan/PP_0015FUK.1/2023-05-23
D'Addiego, J.; Mullojanova, M.; Hikmatov, T.; Tishkova, F.; Hewson, R.

Submission details

Submission ID
PV390612.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-04-06 03:03:08 UTC
Date released
2025-04-06 03:03:40 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-04-06 03:03insdc_ingest_userOPEN
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data

Authors

Author affiliations
UK Health Security Agency, Research & Evaluation

Alignment and QC metrics S

Completeness S
74.40%
Length S
1254
Total ambiguous nucs S
9
Total deleted nucs S
1
Total frame shifts S
0
Total inserted nucs S
2
Total SNPs S
173
Total unknown nucs S
0

Sample details

Earliest release date
2025-04-05
Collection country
Tajikistan
Collection date
2023-05-23
Collection date (lower bound)
2023-05-23
Collection date (upper bound)
2023-05-23
Isolate name
CCHFV_14_169

Host

Host name scientific
Hyalomma anatolicum
Host taxon id
176092

INSDC

INSDC accession S
PV390612.1
NCBI release date
2025-04-05

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • S:A425G
  • S:G428T
  • S:G429A
  • S:A439G
  • S:C445T
  • S:T446C
  • S:A460G
  • S:C478T
  • S:C484A
  • S:C487T
  • S:A490G
  • S:T496C
  • S:C497T
  • S:G499A
  • S:A503C
  • S:C505T
  • S:C514T
  • S:G538A
    • Deletions
    S:1617
    Insertions
    ins_S:1579:A, ins_S:1612:C

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    NP

  • NP:T124A
  • NP:G125Y
  • NP:N150H
  • NP:H195R
  • NP:D199E
  • NP:I246V
  • NP:K263R
  • NP:R270K
  • NP:S275N
  • NP:S301G
  • NP:V436I
    • Deletions
    None
    Insertions
    None

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