PP_0015FTM.1

Tajikistan/CCHFV_12_167/2023-05-25
J. D'Addiego, M. Mullojanova, T. Hikmatov, F. Tishkova & R. Hewson

UK Health Security Agency, Research & Evaluation

Sample details

Collection date
2023-05-25
Sampling location
Tajikistan
Isolate name
CCHFV_12_167

Data use terms

Data use terms
OPEN
Data use terms URL

Lineage

Segment S Lineage
IV.2

INSDC

INSDC accession S
NCBI release date
2025-04-05

Host

Host

Submission details

Submission ID
PV390611.1.S
Submitting group
Date submitted
2025-04-06 03:03:08 UTC
Date released
2025-04-06 03:03:40 UTC
Earliest release date
2025-04-05

Alignment and QC

Length S
1248 (72.5%)
# of SNPs S
163
# of inserted bases S
1
# of ambiguous bases S
34

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • G428A
  • G429A
  • A439G
  • C445T
  • T446C
  • G448C
  • A460G
  • C478T
  • C484A
  • C487T
  • A490G
  • T496C
  • C497T
  • G499A
  • A503C
  • C505T
  • C514T
  • G538A
Deletions
N/A
Insertions

S

ins_1579:A

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

NP

  • NP:G125N
  • NP:N150H
  • NP:H195R
  • NP:D199E
  • NP:I246V
  • NP:R270K
  • NP:S275N
  • NP:S301G
  • NP:V436I
Deletions
N/A
Insertions
N/A

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