PP_0015DNZ.1

Restricted sequence

This sequence is only available under the Restricted Use Terms. If you make use of this data, you must follow the terms of use.
Display Name: Afghanistan/PP_0015DNZ.1/2024-12-23
Wannigama, DhammikaL; Amarasiri, Mohan; Abe, Shuichi; Hongsing, Parichart

Submission details

Submission ID
hMpxV/Afghanistan/YPCH-169/2024
Submitting group
Pathogen Hunter's Research Team
Date submitted
2025-04-05 02:47:30 UTC
Date released
2025-04-05 02:55:14 UTC

Data use terms

Data use terms
RESTRICTED

Data Use Terms History

ChangedUserData Use Terms
2025-04-05 02:47leshanwannigamaRESTRICTED until 2026-04-05
Data use terms URL
https://pathoplexus.org/about/terms-of-use/restricted-data

Authors

Author affiliations
Department of Infectious Diseases and Infection Control, Yamagata Prefectural Central Hospital, Yamagata, Japan

Clade & Lineage

Clade
IIb
Lineage
A.1.1
Outbreak
hMPXV-1

Sampling

Collection method
non-sewered community wastewater

Alignment and QC metrics

Completeness
0.71%
Length
1433
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
2
Total stop codons
0
Total unknown nucs
35

Sample details

Earliest release date
2025-04-05
Collection country
Afghanistan
Collection date
2024-12-23
Collection date (lower bound)
2024-12-23
Collection date (upper bound)
2024-12-23

Sequencing

Sequencing instrument
Snager 3500

Nucleotide mutations

Mutations called relative to the NC_063383.1 reference

Substitutions

  • G30367A
  • G31053A
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_063383.1 reference

    Substitutions
    Deletions
    None
    Insertions
    None

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