PP_001591C.1

Restricted sequence

This sequence is only available under the Restricted Use Terms. If you make use of this data, you must follow the terms of use.
Display Name: Democratic_Republic_of_the_Congo/PP_001591C.1/2024-12-21
Wannigama, DhammikaL; Amarasiri, Mohan; Abe, Shuichi; Hongsing, Parichart

Submission details

Submission ID
hMpxV/DRC/YPCH-11/2024
Submitting group
Pathogen Hunter's Research Team
Date submitted
2025-04-05 02:47:30 UTC
Date released
2025-04-05 02:55:14 UTC

Data use terms

Data use terms
RESTRICTED

Data Use Terms History

ChangedUserData Use Terms
2025-04-05 02:47leshanwannigamaRESTRICTED until 2026-04-05
Data use terms URL
https://pathoplexus.org/about/terms-of-use/restricted-data

Authors

Author affiliations
Department of Infectious Diseases and Infection Control, Yamagata Prefectural Central Hospital, Yamagata, Japan

Clade & Lineage

Clade
Ib
Lineage
None
Outbreak
None

Sampling

Collection method
non-sewered community wastewater

Alignment and QC metrics

Completeness
0.88%
Length
1454
Total ambiguous nucs
0
Total deleted nucs
273
Total frame shifts
0
Total inserted nucs
0
Total SNPs
8
Total stop codons
0
Total unknown nucs
1

Sample details

Earliest release date
2025-04-05
Collection country
Democratic Republic of the Congo
Collection date
2024-12-21
Collection date (lower bound)
2024-12-21
Collection date (upper bound)
2024-12-21

Sequencing

Sequencing instrument
Snager 3500

Nucleotide mutations

Mutations called relative to the NC_063383.1 reference

Substitutions

  • C29763T
  • G29923A
  • A30500T
  • C30730T
  • G31039A
  • C31081T
  • A31102G
  • G31144A
    • Deletions
    29472-29726, 29731-29748
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_063383.1 reference

    Substitutions

    OPG046

  • OPG046:I2V

    • OPG047

  • OPG047:I232K
  • OPG047:D478N
    • Deletions
    None
    Insertions
    None

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