PP_0014EGD.1

Display Name: Cameroon/PP_0014EGD.1/2024-07-01
Gasparine, M.

Submission details

Submission ID
PV112930.1.L
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-12 02:54:30 UTC
Date released
2025-03-12 02:54:38 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-03-12 02:54insdc_ingest_userOPEN
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data

Authors

Author affiliations
University of Corsica, Unite des Virus Emergents

Alignment and QC metrics L

Completeness L
1.25%
Length L
151
Total ambiguous nucs L
0
Total deleted nucs L
0
Total frame shifts L
0
Total inserted nucs L
0
Total SNPs L
9
Total unknown nucs L
0

Sample details

Earliest release date
2025-03-11
Collection country
Cameroon
Collection date
2024-07
Collection date (lower bound)
2024-07-01
Collection date (upper bound)
2024-07-31
Isolate name
202-3

Host

Host name scientific
Homo sapiens
Host taxon id
9606

INSDC

INSDC accession L
PV112930.1
NCBI release date
2025-03-11

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • L:C9649T
  • L:T9655G
  • L:T9658G
  • L:C9664T
  • L:A9739G
  • L:T9744A
  • L:G9764A
  • L:G9767A
  • L:G9774C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    RdRp

  • RdRp:F3223Y
  • RdRp:V3230I
  • RdRp:D3231N
  • RdRp:S3233T
    • Deletions
    None
    Insertions
    None

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