PP_0014DGE.1

Display Name: Spain/PP_0014DGE.1/2024-07-31
Aguero, M.; Villalba, R.; Ruano, M. J.; Lopez, A.; Gomez, B.

Submission details

Submission ID
PV089519.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-09 04:32:02 UTC
Date released
2025-03-09 04:32:09 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-03-09 04:32insdc_ingest_userOPEN
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data

Authors

Author affiliations
Laboratorio Central de Veterinaria - Ministerio de Agricultura, Pesca y Alimentacion

Alignment and QC metrics

Completeness
2.58%
Frame shifts
NS5:465-905(nt:9071-10395)
Length
174
Total ambiguous nucs
0
Total deleted nucs
110
Total frame shifts
1
Total inserted nucs
0
Total SNPs
30
Total stop codons
0
Total unknown nucs
0

Sample details

Earliest release date
2025-03-08
Collection subdivision level 1
Andalusia
Collection country
Spain
Collection date
2024-07-31
Collection date (lower bound)
2024-07-31
Collection date (upper bound)
2024-07-31
Isolate name
SPA/2723-21/2024/brain

Host

Host name scientific
Aquila adalberti
Host taxon id
52408

INSDC

INSDC accession
PV089519.1
NCBI release date
2025-03-08
NCBI update date
2025-03-08

Lineage

Lineage
2

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C9072T
  • A9084C
  • G9087A
  • C9090T
  • G9093A
  • A9096C
  • C9123A
  • A9126G
  • T9129C
  • T9135C
  • C9144T
  • G9147A
  • G9153C
  • T9156A
  • T9159C
  • T9180G
  • A9183T
  • A9186G
    • Deletions
    8961-9070
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions
    Deletions
    NS5:428-464
    Insertions
    None

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