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Crimean-Congo Hemorrhagic Fever Virus
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PP_0014CM4.1
Download
Download FASTA
Download metadata TSV
Armenia/PP_0014CM4.1/2023
A. Zhirova,
Y. Lisitskaya,
A. Volynkina,
A. Manucharyan &
G. Melik-Andreasyan
Stavropol State Research Anti-Plague Institute, Laboratory for diagnostics of viral infections
Sample details
Collection date
2023
Sampling location
Armenia
Isolate name
521-ARM-TI-2023
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2025-03-06 03:33
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
INSDC
INSDC accession L
PV105952.1
INSDC accession M
PV091007.1
NCBI release date
2025-03-05
Host
Host
Ixodoidea
Submission details
Submission ID
PV105952.1.L/PV091007.1.M
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-06 03:33:40 UTC
Date released
2025-03-06 03:34:10 UTC
Earliest release date
2025-03-05
Alignment and QC
Length L
11838 (97.8%)
# of SNPs L
1238
Length M
5067 (94.5%)
# of SNPs M
963
# of deleted bases M
3
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
A
91
G
G
93
A
C
100
T
A
109
G
T
131
A
C
148
T
T
151
C
T
154
C
T
160
C
T
163
C
T
202
C
C
205
T
C
228
T
T
229
C
A
240
C
T
241
C
T
253
C
T
254
A
Show more
M
A
80
G
G
84
A
T
86
C
C
92
T
T
100
C
A
101
G
T
102
C
C
103
T
A
108
G
A
112
G
T
113
C
G
114
T
C
115
T
A
116
C
C
119
T
G
124
A
G
136
T
T
137
G
Show more
Deletions
M
333-335
Insertions
N/A
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
I
3
T
GPC:
S
4
L
GPC:
M
6
V
GPC:
Y
7
C
GPC:
A
8
F
GPC:
C
11
Y
GPC:
C
15
L
GPC:
E
19
G
GPC:
T
20
A
GPC:
G
22
R
GPC:
S
23
Q
GPC:
H
24
S
GPC:
E
26
A
GPC:
R
28
E
GPC:
K
31
G
GPC:
D
33
N
GPC:
M
35
T
GPC:
T
37
A
Show more
RdRp
RdRp:
S
6
N
RdRp:
S
19
T
RdRp:
P
51
L
RdRp:
D
55
A
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
L
RdRp:
R
80
K
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
A
202
V
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
K
218
R
RdRp:
I
223
L
RdRp:
K
275
R
RdRp:
I
279
V
RdRp:
V
352
I
Show more
Deletions
GPC
GPC:77
Insertions
N/A
L (unaligned)
M (unaligned)
S (unaligned)
L (aligned)
M (aligned)
S (aligned)
Aligned amino acid sequences
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