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Status
PP_0014CHC.1
Download
Download FASTA
Download metadata TSV
Display Name: Armenia/PP_0014CHC.1/2023-01-01
Zhirova,
A.; Lisitskaya,
Y.; Volynkina,
A.; Manucharyan,
A.; Melik-Andreasyan,
G.
Submission details
Submission ID
PV105948.1.L/PV091003.1.M
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-06 03:33:40 UTC
Date released
2025-03-06 03:34:10 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2025-03-06 03:33
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Authors
Author affiliations
Stavropol State Research Anti-Plague Institute, Laboratory for diagnostics of viral infections
Alignment and QC metrics L
Completeness L
97.77%
Length L
11838
Total ambiguous nucs L
0
Total deleted nucs L
0
Total frame shifts L
0
Total inserted nucs L
0
Total SNPs L
1224
Total unknown nucs L
0
Alignment and QC metrics M
Completeness M
94.48%
Length M
5067
Total ambiguous nucs M
0
Total deleted nucs M
6
Total frame shifts M
0
Total inserted nucs M
3
Total SNPs M
972
Total unknown nucs M
0
Sample details
Earliest release date
2025-03-05
Collection country
Armenia
Collection date
2023
Collection date (lower bound)
2023-01-01
Collection date (upper bound)
2023-12-31
Isolate name
229-ARM-TI-2023
Host
Host name scientific
Ixodoidea
Host taxon id
297308
INSDC
INSDC accession L
PV105948.1
INSDC accession M
PV091003.1
NCBI release date
2025-03-05
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
L:
A
91
G
L:
G
93
A
L:
A
109
G
L:
A
124
T
L:
T
131
A
L:
C
148
T
L:
T
151
C
L:
T
154
C
L:
T
160
C
L:
T
163
C
L:
T
202
C
L:
T
229
C
L:
A
240
C
L:
A
252
G
L:
T
254
A
L:
G
264
A
L:
C
265
T
L:
A
268
G
Show more
M
M:
A
80
G
M:
T
83
C
M:
G
84
A
M:
T
86
C
M:
C
92
T
M:
T
100
C
M:
T
102
C
M:
C
103
T
M:
A
108
G
M:
A
112
G
M:
T
113
C
M:
G
114
T
M:
C
115
T
M:
A
116
C
M:
A
117
G
M:
C
119
T
M:
G
124
A
M:
G
136
T
Show more
Deletions
M:165-167, M:333-335
Insertions
ins_M:158:CAG
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
I
3
T
GPC:
S
4
L
GPC:
M
6
V
GPC:
Y
7
C
GPC:
A
8
F
GPC:
I
9
V
GPC:
C
11
Y
GPC:
C
15
L
GPC:
G
18
E
GPC:
E
19
G
GPC:
T
20
A
GPC:
S
23
Q
GPC:
H
24
S
GPC:
E
26
A
GPC:
R
28
E
GPC:
K
31
G
GPC:
D
33
N
GPC:
M
35
T
Show more
RdRp
RdRp:
S
6
N
RdRp:
Q
16
H
RdRp:
S
19
T
RdRp:
D
55
A
RdRp:
H
59
R
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
L
RdRp:
R
80
K
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
K
218
R
RdRp:
A
263
S
RdRp:
K
275
R
RdRp:
I
279
V
RdRp:
V
352
I
Show more
Deletions
GPC:77
Insertions
None
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