PP_00149YK.1

Display Name: Armenia/PP_00149YK.1/2023-01-01
Zhirova, A.; Lisitskaya, Y.; Volynkina, A.

Submission details

Submission ID
PQ878901.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-03 03:31:20 UTC
Date released
2025-03-03 03:31:25 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-03-03 03:31insdc_ingest_userOPEN
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data

Authors

Author affiliations
Stavropol State Research Anti-Plague Institute, Laboratory for diagnostics of viral infections

Alignment and QC metrics S

Completeness S
42.22%
Length S
538
Total ambiguous nucs S
0
Total deleted nucs S
168
Total frame shifts S
0
Total inserted nucs S
0
Total SNPs S
80
Total unknown nucs S
0

Sample details

Earliest release date
2025-03-02
Collection country
Armenia
Collection date
2023
Collection date (lower bound)
2023-01-01
Collection date (upper bound)
2023-12-31
Isolate name
279-ARM-TI-2023

Host

Host name scientific
Ixodoidea
Host taxon id
297308

INSDC

INSDC accession S
PQ878901.1
NCBI release date
2025-03-02

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • S:C115T
  • S:G134A
  • S:C142T
  • S:T157C
  • S:C166T
  • S:G171A
  • S:T175A
  • S:C178A
  • S:T181C
  • S:T182C
  • S:C187T
  • S:G189A
  • S:T211C
  • S:C217T
  • S:C244T
  • S:T250G
  • S:C254T
  • S:G262A
    • Deletions
    S:647-814
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    NP

  • NP:V27M
  • NP:S39N
  • NP:R45K
  • NP:A100S
  • NP:S109N
  • NP:T111A
  • NP:T124A
  • NP:G125N
  • NP:H195R
  • NP:D199E
    • Deletions
    None
    Insertions
    None

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