REVOKED

PP_00149Q1.1

Armenia/279-ARM-TI-2023/2023
A. Zhirova, Y. Lisitskaya, A. Volynkina, A. Manucharyan & G. Melik-Andreasyan

Stavropol State Research Anti-Plague Institute, Laboratory for diagnostics of viral infections

Sample details

Collection date
2023
Sampling location
Armenia
Isolate name
279-ARM-TI-2023

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

INSDC accession L
INSDC accession M
NCBI release date
2025-03-02

Host

Host

Submission details

Submission ID
PQ878919.1.L/PQ878910.1.M
Submitting group
Date submitted
2025-03-03 03:31:20 UTC
Date released
2025-03-03 03:31:25 UTC
Earliest release date
2025-03-02

Alignment and QC

Length L
437 (3.61%)
# of SNPs L
40
Length M
435 (8.11%)
# of SNPs M
81

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • T131A
  • C148T
  • T151C
  • T154C
  • T160C
  • T163C
  • T202C
  • T229C
  • A240C
  • T254A
  • G264A
  • C265T
  • A268G
  • C276T
  • A310G
  • C313T
  • G315A
  • A316G

M

  • C4644T
  • C4652T
  • T4661G
  • A4664G
  • C4671T
  • T4676C
  • A4694T
  • C4697T
  • A4701C
  • A4713G
  • A4730G
  • C4734A
  • A4736G
  • T4742A
  • T4743C
  • G4745A
  • C4748T
  • A4751G
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

GPC

  • GPC:H1527Y
  • GPC:E1534D
  • GPC:K1537Q
  • GPC:N1541D
  • GPC:Q1548K
  • GPC:S1564D
  • GPC:S1571G
  • GPC:M1587V
  • GPC:G1590S
  • GPC:I1591V
  • GPC:V1595F
  • GPC:F1596S
  • GPC:M1597I
  • GPC:F1600L
  • GPC:I1607V
  • GPC:I1610V
  • GPC:R1618K
  • GPC:K1652R
  • GPC:K1661R

RdRp

  • RdRp:S19T
  • RdRp:D55A
  • RdRp:Y60N
  • RdRp:R63H
  • RdRp:S67L
  • RdRp:R80K
Deletions
N/A
Insertions
N/A

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