REVOKED

PP_00110MN.1

Display Name: Senegal/PP_00110MN.1/2022-08
O. Sene

Sample details

Collection date
2022-08
Country
Senegal

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-01-22 09:24insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Institut Pasteur, Dakar, Virology

INSDC

INSDC accession M
NCBI release date
2025-01-18

Host

Host taxon ID
Host name - scientific
Rhipicephalus evertsi

Alignment and QC metrics M

Length M
5189
Completeness M
96.70%
# of SNPs M
148
# of inserted bases M
0
# of deleted bases M
0
# of ambiguous bases M
0
# of unknown bases M
0
# of frame shifts M
0
# of stop codons M
0

Submission details

Submission ID
PP894743.1.M
Submitting group
Date submitted
2025-01-22 09:24:35 UTC
Date released
2025-01-22 09:25:07 UTC
Earliest release date
2025-01-18

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

M

  • M:A203G
  • M:C217T
  • M:T259C
  • M:C269T
  • M:T301C
  • M:G312C
  • M:C320T
  • M:T360C
  • M:A377G
  • M:T385C
  • M:C404T
  • M:T406C
  • M:C410T
  • M:C412A
  • M:G414A
  • M:C426T
  • M:C428T
  • M:C431T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    GPC

  • GPC:P42L
  • GPC:L56P
  • GPC:L70S
  • GPC:G74R
  • GPC:S90P
  • GPC:V98A
  • GPC:L105S
  • GPC:A107E
  • GPC:G108S
  • GPC:P112S
  • GPC:A122T
  • GPC:P123L
  • GPC:N131S
  • GPC:S171P
  • GPC:Q191R
  • GPC:L216P
  • GPC:P226L
  • GPC:K250E
    • Deletions
    None
    Insertions
    None

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