PP_00110F1.1

Display Name: Senegal/PP_00110F1.1/2022-09-01
Sene, O.

Submission details

Submission ID
PP894734.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-01-22 09:24:35 UTC
Date released
2025-01-22 09:25:07 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-01-22 09:24insdc_ingest_userOPEN
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data

Authors

Author affiliations
Institut Pasteur, Dakar, Virology

Alignment and QC metrics S

Completeness S
99.94%
Length S
1672
Total ambiguous nucs S
0
Total deleted nucs S
0
Total frame shifts S
0
Total inserted nucs S
1
Total SNPs S
46
Total unknown nucs S
0

Sample details

Earliest release date
2025-01-18
Collection country
Senegal
Collection date
2022-09
Collection date (lower bound)
2022-09-01
Collection date (upper bound)
2022-09-30

Host

Host name scientific
Hyalomma impeltatum
Host taxon id
563069

INSDC

INSDC accession S
PP894734.1
NCBI release date
2025-01-18

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • S:G54A
  • S:G67A
  • S:G229A
  • S:T253C
  • S:G262A
  • S:A298G
  • S:A322G
  • S:G346A
  • S:A358T
  • S:C370T
  • S:G397A
  • S:G409A
  • S:C427T
  • S:G448A
  • S:A639G
  • S:C670T
  • S:C712T
  • S:A791G
    • Deletions
    None
    Insertions
    ins_S:1581:T

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    NP

  • NP:H195R
  • NP:I246V
  • NP:S301G
    • Deletions
    None
    Insertions
    None

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