REVOKED

PP_00110F1.1

Display Name: Senegal/PP_00110F1.1/2022-09
O. Sene

Sample details

Collection date
2022-09
Country
Senegal

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-01-22 09:24insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Institut Pasteur, Dakar, Virology

INSDC

INSDC accession S
NCBI release date
2025-01-18

Host

Host taxon ID
Host name - scientific
Hyalomma impeltatum

Alignment and QC metrics S

Length S
1672
Completeness S
99.94%
# of SNPs S
46
# of inserted bases S
1
# of deleted bases S
0
# of ambiguous bases S
0
# of unknown bases S
0
# of frame shifts S
0
# of stop codons S
0

Submission details

Submission ID
PP894734.1.S
Submitting group
Date submitted
2025-01-22 09:24:35 UTC
Date released
2025-01-22 09:25:07 UTC
Earliest release date
2025-01-18

Lineage

Segment S Lineage
III

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • S:G54A
  • S:G67A
  • S:G229A
  • S:T253C
  • S:G262A
  • S:A298G
  • S:A322G
  • S:G346A
  • S:A358T
  • S:C370T
  • S:G397A
  • S:G409A
  • S:C427T
  • S:G448A
  • S:A639G
  • S:C670T
  • S:C712T
  • S:A791G
    • Deletions
    None
    Insertions
    ins_S:1581:T

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    NP

  • NP:H195R
  • NP:I246V
  • NP:S301G
    • Deletions
    None
    Insertions
    None

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