REVOKED

PP_00110B9.1

Display Name: Senegal/PP_00110B9.1/2022-09
O. Sene

Sample details

Collection date
2022-09
Country
Senegal

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-01-22 09:24insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Institut Pasteur, Dakar, Virology

INSDC

INSDC accession S
NCBI release date
2025-01-18

Host

Host taxon ID
Host name - scientific
Hyalomma impeltatum

Alignment and QC metrics S

Length S
1686
Completeness S
100.00%
# of SNPs S
317
# of inserted bases S
17
# of deleted bases S
3
# of ambiguous bases S
0
# of unknown bases S
0
# of frame shifts S
0
# of stop codons S
0

Submission details

Submission ID
PP894729.1.S
Submitting group
Date submitted
2025-01-22 09:24:35 UTC
Date released
2025-01-22 09:25:07 UTC
Earliest release date
2025-01-18

Lineage

Segment S Lineage
I

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • S:C38A
  • S:T39C
  • S:G54A
  • S:A61G
  • S:G67A
  • S:G73A
  • S:T79C
  • S:A92C
  • S:G99A
  • S:G100A
  • S:A109G
  • S:A118G
  • S:T127C
  • S:A130G
  • S:C139T
  • S:C142T
  • S:C160T
  • S:T163C
    • Deletions
    S:1512-1514
    Insertions
    ins_S:1582:TTACAGTCACCAAAAC, ins_S:1616:A

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    NP

  • NP:M13L
  • NP:R15K
  • NP:S39N
  • NP:S52G
  • NP:F73Y
  • NP:K91R
  • NP:A100T
  • NP:T124A
  • NP:G125N
  • NP:A154S
  • NP:H195K
  • NP:V198I
  • NP:D199E
  • NP:V205I
  • NP:I220V
  • NP:I246V
  • NP:D248E
  • NP:N258K
    • Deletions
    None
    Insertions
    None

    Report an issue with this sequence or metadata

    Create GitHub issue