REVOKED

PP_001101V.1

Senegal/PP_001101V.1/2022-08
O. Sene

Institut Pasteur, Dakar, Virology

Sample details

Collection date
2022-08
Sampling location
Senegal

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-01-22 09:24insdc_ingest_userOPEN
Data use terms URL

INSDC

INSDC accession L
NCBI release date
2025-01-18

Host

Host

Submission details

Submission ID
PP894719.1.L
Submitting group
Date submitted
2025-01-22 09:24:35 UTC
Date released
2025-01-22 09:25:07 UTC
Earliest release date
2025-01-18

Alignment and QC

Length L
12019 (99.3%)
# of SNPs L
294
# of ambiguous bases L
1

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • T65C
  • T70C
  • G93A
  • G130T
  • T151C
  • C244T
  • T254A
  • G286A
  • A298G
  • C313T
  • T340C
  • C343T
  • T382C
  • A409G
  • C427T
  • A460G
  • T550G
  • G553A
Deletions
N/A
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

RdRp

  • RdRp:S6N
  • RdRp:Y60N
  • RdRp:I505T
  • RdRp:T767A
  • RdRp:K809R
  • RdRp:G812E
  • RdRp:T876S
  • RdRp:A1038T
  • RdRp:G1047E
  • RdRp:V1228I
  • RdRp:N1367D
  • RdRp:N1514S
  • RdRp:M1647L
  • RdRp:P1660T
  • RdRp:T1675N
  • RdRp:R1676K
  • RdRp:I1949V
  • RdRp:I1996V
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue