PP_0010YAF.1

Display Name: Austria/PP_0010YAF.1/2024-09-13
Florian, D. M.; Aberle, S. W.; Camp, J. V.

Submission details

Submission ID
PQ785893.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-01-19 09:44:38 UTC
Date released
2025-01-19 09:44:41 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-01-19 09:44insdc_ingest_userOPEN
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data

Authors

Author affiliations
Medical University of Vienna, Center for Virology

Alignment and QC metrics

Completeness
13.29%
Length
1465
Total ambiguous nucs
0
Total deleted nucs
25
Total frame shifts
0
Total inserted nucs
24
Total SNPs
289
Total stop codons
0
Total unknown nucs
0

Sample details

Earliest release date
2025-01-08
Collection country
Austria
Collection date
2024-09-13
Collection date (lower bound)
2024-09-13
Collection date (upper bound)
2024-09-13
Isolate name
Austria/MUW1754593/2024

Host

Host name scientific
Homo sapiens
Host taxon id
9606

INSDC

INSDC accession
PQ785893.1
NCBI release date
2025-01-08
NCBI update date
2025-01-08

Lineage

Lineage
2

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C9123A
  • A9126G
  • T9129C
  • T9135C
  • C9144T
  • G9147A
  • T9150C
  • G9153C
  • T9156A
  • T9159C
  • T9180G
  • A9183T
  • A9186G
  • G9189A
  • T9204A
  • C9207T
  • G9210A
  • G9216A
    • Deletions
    10409-10411, 10417-10426, 10467-10470, 10487-10494
    Insertions
    ins_10483:GTT, ins_10501:T, ins_10448:G, ins_10458:CTTGAATTATGATTAATTA

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS5

  • NS5:R522K
  • NS5:R527K
  • NS5:R546K
  • NS5:A569S
  • NS5:R590K
  • NS5:E638G
  • NS5:T641G
  • NS5:K644E
  • NS5:D676N
  • NS5:V740I
  • NS5:G805K
  • NS5:E816A
  • NS5:K837R
  • NS5:A860T
  • NS5:Q869H
  • NS5:A877S
  • NS5:I878V
  • NS5:D881E
    • Deletions
    None
    Insertions
    None

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