PP_0010Y1Z.1

Display Name: Austria/PP_0010Y1Z.1/2024-07-25
Florian, D. M.; Aberle, S. W.; Camp, J. V.

Submission details

Submission ID
PQ785884.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-01-19 09:44:38 UTC
Date released
2025-01-19 09:44:41 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-01-19 09:44insdc_ingest_userOPEN
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data

Authors

Author affiliations
Medical University of Vienna, Center for Virology

Alignment and QC metrics

Completeness
13.29%
Length
1486
Total ambiguous nucs
0
Total deleted nucs
17
Total frame shifts
0
Total inserted nucs
37
Total SNPs
282
Total stop codons
0
Total unknown nucs
0

Sample details

Earliest release date
2025-01-08
Collection country
Austria
Collection date
2024-07-25
Collection date (lower bound)
2024-07-25
Collection date (upper bound)
2024-07-25
Isolate name
Austria/MUW1743339/2024

Host

Host name scientific
Homo sapiens
Host taxon id
9606

INSDC

INSDC accession
PQ785884.1
NCBI release date
2025-01-08
NCBI update date
2025-01-08

Lineage

Lineage
2

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C9123A
  • A9126G
  • T9129C
  • T9135C
  • C9144T
  • G9147A
  • G9153C
  • T9156A
  • T9159C
  • T9180G
  • A9183T
  • A9186G
  • T9204A
  • C9207T
  • G9216A
  • C9219A
  • C9222G
  • A9225G
    • Deletions
    10421, 10467-10470, 10487-10494, 10514-10517
    Insertions
    ins_10408:TGTATTGAGT, ins_10452:AGA, ins_10417:GTTGTAGTGTTTA, ins_10483:GTT, ins_10427:G, ins_10501:T, ins_10461:AG, ins_10522:AACG

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS5

  • NS5:R522K
  • NS5:R527K
  • NS5:R546K
  • NS5:A569S
  • NS5:R590K
  • NS5:T641G
  • NS5:F679S
  • NS5:V740I
  • NS5:G805K
  • NS5:E816A
  • NS5:K837R
  • NS5:A860T
  • NS5:Q869H
  • NS5:A877S
  • NS5:I878V
  • NS5:D881E
  • NS5:K892R
  • NS5:T898I
  • NS5:L899V
    • Deletions
    None
    Insertions
    None

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