PP_000YP46.1

Display Name: South_Korea/PP_000YP46.1/2022-11-22
Chung, Y.-S.; Yi, H.; Choi, M.-M.; Kim, J.-W.; Lee, M.; Lee, S.; Sim, G.; Lee, J. H.; Shin, H.; Choi, C.

Submission details

Submission ID
OR459777.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-12-09 18:47:55 UTC
Date released
2024-12-09 19:01:24 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-12-09 18:48insdc_ingest_userOPEN
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data

Authors

Author affiliations
Korea Disease Control and Prevention Agency, Division of High-risk Pathogens

INSDC

Bioproject accession
PRJNA935252
Biosample accession
SAMN36971843
INSDC accession
OR459777.1
NCBI release date
2023-08-26
NCBI update date
2023-08-26
SRA run accession
SRR25627335

Clade & Lineage

Clade
IIb
Lineage
A.2.1
Outbreak
hMPXV-1

Alignment states and QC metrics

Completeness
100.00%
Frame shifts
OPG174:290-347(nt:148355-148528)
Length
197175
Total ambiguous nucs
0
Total deleted nucs
37
Total frame shifts
1
Total inserted nucs
3
Total SNPs
44
Total stop codons
0
Total unknown nucs
0

Sample details

Collection country
South Korea
Collection date
2022-11-22
Collection date (lower bound)
2022-11-22
Collection date (upper bound)
2022-11-22
Isolate name
MPXV-ROK-P004-2022

Host

Host name scientific
Homo sapiens
Host taxon id
9606

Nucleotide mutations

Substitutions

  • C13298T
  • A18769G
  • C18792T
  • C25072T
  • T28175C
  • C30636T
  • C34472T
  • C34578T
  • G36898A
  • G42183A
  • C42903T
  • A46522G
  • G50346A
  • G52289A
  • C54268T
  • G67261A
  • C72231T
  • C73616T
    • Deletions
    136543-136554, 148529-148535, 169763-169774, 174531-174536
    Insertions
    ins_609:TT, ins_170904:T

    Amino acid mutations

    Substitutions

    OPG031

  • OPG031:D13N

    • OPG040

  • OPG040:R136Q

    • OPG047

  • OPG047:D187N

    • OPG053

  • OPG053:G38E

    • OPG062

  • OPG062:M79I

    • OPG063

  • OPG063:M262I

    • OPG069

  • OPG069:D121N

    • OPG071

  • OPG071:T717I

    • OPG085

  • OPG085:S424L

    • OPG102

  • OPG102:D108N

    • OPG113

  • OPG113:E553K

    • OPG116

  • OPG116:D192E

    • OPG118

  • OPG118:K606E

    • OPG145

  • OPG145:D29N

    • OPG160

  • OPG160:S195A

    • OPG174

  • OPG174:S44L

    • OPG176

  • OPG176:Q22*

    • OPG180

  • OPG180:D442N

    • OPG188

  • OPG188:H120Y

    • OPG190

  • OPG190:P221S

    • OPG205

  • OPG205:R689C

    • OPG208

  • OPG208:S91L

    • OPG210

  • OPG210:D198N
    • Deletions
    OPG153:382-385, OPG174:288, OPG174:289, OPG197:32-35
    Insertions
    None