PP_000TCW8.1

USA/MPXV_USA_2021_MD/2021-11
C. M. Gigante, R. Myers, M. H. Seabolt, K. Wilkins, A. McCollum, C. Hutson, W. Davidson, A. Rao, D. Blythe & Y. Li

Centers for Disease Control and Prevention, Division of High-Consequence Pathogens and Pathology

Sample details

Collection date
2021-11
Sampling location
USA (MD)
Isolate name
MPXV_USA_2021_MD

Data use terms

Data use terms
OPEN
Data use terms URL

Clade & Lineage

Clade
IIb
Outbreak
sh2017
Lineage
A.1.1

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2022-06-03
NCBI update date
2022-09-01

Host

Host

Submission details

Submission ID
ON676708.1
Submitting group
Date submitted
2024-12-09 18:47:55 UTC
Date released
2024-12-09 18:51:14 UTC
Earliest release date
2022-06-03

Cited in

Alignment and QC

Length
197173 (100%)
# of SNPs
58
# of inserted bases
81
# of deleted bases
117
# of unknown bases
4

Nucleotide mutations

Mutations called relative to the NC_063383.1 reference

Substitutions
  • G1262A
  • G2591A
  • G3522A
  • C3818T
  • C7771T
  • G14000T
  • G15428A
  • A18769G
  • G21723A
  • C23564T
  • G25661A
  • T28175C
  • G30367A
  • G31053A
  • G34459A
  • G37202A
  • G38360A
  • C38662T
Deletions
607-609, 133177-133186, 169769-169774, 179082-179176, 196615-196617
Insertions
ins_133102:TTTTTTTT, ins_173317:ATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAT, ins_192441:NNN

Amino acid substitutions

Substitutions called relative to the NC_063383.1 reference

Substitutions

OPG001

  • OPG001:S105L

OPG002

  • OPG002:S54F

OPG003

  • OPG003:D264N

OPG025

  • OPG025:A423D

OPG047

  • OPG047:R48C

OPG053

  • OPG053:P78S

OPG056

  • OPG056:E125K

OPG071

  • OPG071:L108F

OPG072

  • OPG072:D56N

OPG092

  • OPG092:D196N

OPG093

  • OPG093:S30L

OPG105

  • OPG105:S734L

OPG109

  • OPG109:H740Y

OPG118

  • OPG118:K606E

OPG136

  • OPG136:D98N

OPG139

  • OPG139:A17T

OPG145

  • OPG145:E62K
  • OPG145:R243Q
  • OPG145:E435K

OPG150

  • OPG150:S307L

OPG193

  • OPG193:L263F

OPG210

  • OPG210:D209N
  • OPG210:M1741I
Deletions

OPG197

OPG197:34, OPG197:35
Insertions
N/A

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