PP_000SNXY.1

Display Name: Hungary/PP_000SNXY.1/2024
A. Nagy

Sample details

Collection date
2024
Collection date (lower bound)
2024-01-01
Collection date (upper bound)
2024-11-12
Collection subdivision level 1
Vamosmikola
Isolate name
8175_2024_WNV_HU
Collection country
Hungary

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2024-11-13 05:34insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
2

Authors

Author affiliations
National Center for Public Health and Pharmacy, National Reference Laboratory for Viral Zoonoses

INSDC

NCBI release date
2024-11-12
NCBI update date
2024-11-12
INSDC accession

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics

Total stop codons
0
Length
420
Total SNPs
82
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
3.81%

Submission details

Submission ID
PQ462390.1
Submitting group
Date submitted
2024-11-13 05:34:19 UTC
Date released
2024-11-13 05:34:26 UTC
Earliest release date
2024-11-12

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • G5219A
  • T5223A
  • G5226T
  • A5229C
  • G5232A
  • A5241G
  • A5250C
  • G5255A
  • C5260T
  • A5265G
  • A5268G
  • C5271T
  • G5274A
  • A5277G
  • G5280A
  • A5283C
  • T5292C
  • G5295T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS3

  • NS3:R203K
  • NS3:R215K
  • NS3:A233S
  • NS3:N253S
  • NS3:S302A
  • NS3:S323P
  • NS3:S331A
  • NS3:L336M
    • Deletions
    None
    Insertions
    None

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