PP_000SMLM.1

Display Name: Nigeria/PP_000SMLM.1/1966
L. Peng, S. Hirsch, G. Kocher, M. Mehta & M. Holbrook

Sample details

Collection date
1966
Country
Nigeria
Isolate name
CCHFV_IRF414_L

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2024-11-12 19:51insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
NIH/NIAID, IRF

INSDC

INSDC accession L
NCBI release date
2024-11-09

Host

Host taxon ID
Host name - scientific
Hyalomma excavatum
Is lab host
True

Alignment and QC metrics L

Length L
12068
Completeness L
99.67%
# of SNPs L
8
# of inserted bases L
0
# of deleted bases L
0
# of ambiguous bases L
0
# of unknown bases L
0
# of frame shifts L
0
# of stop codons L
0

Submission details

Submission ID
PQ463982.1.L
Submitting group
Date submitted
2024-11-12 19:51:06 UTC
Date released
2024-11-12 19:51:34 UTC
Earliest release date
2024-11-09

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • L:G3216A
  • L:C4117A
  • L:C5054A
  • L:T5065A
  • L:C5100A
  • L:C5798T
  • L:A5830T
  • L:T5875C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    RdRp

  • RdRp:G1047E
  • RdRp:P1660T
  • RdRp:T1675N
    • Deletions
    None
    Insertions
    None

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