PP_000RE3X.1

France/PP_000RE3X.1/2023
C. Picard & S. Baize

Institut Pasteur, Virology

Sample details

Collection date
2023
Sampling location
France (Europe)
Isolate name
7AD3

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2024-08-27 12:11insdc_ingest_userOPEN
Data use terms URL

Lineage

Segment S Lineage
III

INSDC

INSDC accession L
INSDC accession M
INSDC accession S
NCBI release date
2024-01-21

Host

Host

Submission details

Submission ID
PP067061.1.L/PP067075.1.M/PP067047.1.S
Submitting group
Date submitted
2024-08-27 12:10:45 UTC
Date released
2024-08-27 12:16:35 UTC
Earliest release date
2024-01-21

Alignment and QC

Length L
11838 (97.8%)
# of SNPs L
241
Length M
4335 (80.8%)
# of SNPs M
374
Length S
1449 (86.7%)
# of SNPs S
106

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • G93A
  • A220G
  • T254A
  • A298G
  • C313T
  • T340C
  • T550A
  • G553A
  • C568T
  • G619A
  • C673T
  • C727T
  • A745G
  • G766A
  • T781C
  • T790C
  • C829T
  • A859G

M

  • G818A
  • A833G
  • A840G
  • T860C
  • T866C
  • T872C
  • T887C
  • G890C
  • T897C
  • A899T
  • G908A
  • A911T
  • T938C
  • A941G
  • G944A
  • A955G
  • T968C
  • C983T

S

  • G67A
  • G99A
  • G100A
  • C178A
  • G189A
  • T199C
  • G202A
  • G229A
  • C235T
  • A247G
  • G271A
  • C295T
  • A298G
  • A322G
  • A327G
  • G346A
  • A358C
  • C370T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

GPC

  • GPC:K250E
  • GPC:Q273H
  • GPC:K288R
  • GPC:T298A
  • GPC:K302E
  • GPC:P334H
  • GPC:G336K
  • GPC:L337P
  • GPC:E341K
  • GPC:I377V
  • GPC:V385A
  • GPC:V433L
  • GPC:I445A
  • GPC:A448T
  • GPC:Y455H
  • GPC:V459T
  • GPC:D484G
  • GPC:A511V

NP

  • NP:R15K
  • NP:R45K
  • NP:K91R
  • NP:T124A
  • NP:G125N
  • NP:L179Q
  • NP:H195R
  • NP:I246V
  • NP:S301G
  • NP:T418I
  • NP:K428R
  • NP:V436I

RdRp

  • RdRp:S6N
  • RdRp:Y60N
  • RdRp:I223M
  • RdRp:I261M
  • RdRp:I505T
  • RdRp:T767A
  • RdRp:R770K
  • RdRp:I783V
  • RdRp:K809R
  • RdRp:G812E
  • RdRp:T876S
  • RdRp:G1029S
  • RdRp:A1038T
  • RdRp:G1047E
  • RdRp:H1161N
  • RdRp:D1173N
  • RdRp:V1228I
  • RdRp:N1244S
Deletions
N/A
Insertions
N/A

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