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Status
PP_0004GRT.1
Download FASTA
Display Name: Hungary/PP_0004GRT.1/2023-01-01
A. Nagy,
K. Kerenyi
Submission details
Submission ID
PP197722.1
Submitter
insdc_ingest_user
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-08-27 12:07:44 UTC
Date released
2024-08-27 12:22:34 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2024-08-27 12:09
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Authors
Author affiliations
National Center for Public Health and Pharmacy, National Reference Laboratory for Viral Zoonoses
Alignment states and QC metrics
Completeness
4.00%
Length
288
Total ambiguous nucs
0
Total deleted nucs
153
Total frame shifts
0
Total inserted nucs
0
Total SNPs
48
Total stop codons
0
Total unknown nucs
0
Sample details
Collection subdivision level 1
Hajdudorog
Collection subdivision level 2
Europe
Collection country
Hungary
Collection date
2023-01-01
Isolate name
3360_NS3_WNV_Hungary_2023
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC
INSDC accession
PP197722.1
NCBI release date
2024-01-30
NCBI update date
2024-01-30
Lineage
Lineage
2
Nucleotide mutations
Substitutions
T
5223
A
G
5226
T
A
5229
C
G
5232
A
A
5241
G
A
5250
C
G
5255
A
C
5260
T
A
5265
G
A
5268
G
C
5271
T
G
5274
A
A
5277
G
G
5280
A
A
5283
C
T
5292
C
G
5295
T
G
5308
T
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Deletions
5067-5219
Insertions
None
Amino acid mutations
Substitutions
NS3
NS3:
R
215
K
NS3:
A
233
S
NS3:
N
253
S
NS3:
P
277
L
NS3:
V
283
I
Deletions
NS3:201-203
Insertions
None
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