PP_0004GM1.1

Display Name: Italy/PP_0004GM1.1/2023-08-24
F. Monaco, F. Valleriani, G. Amatori, G. Savini, L. Teodori, M. Marcacci

Submission details

Submission ID
PP104379.1
Submitter
insdc_ingest_user
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-08-27 12:07:44 UTC
Date released
2024-08-27 12:22:34 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-08-27 12:09insdc_ingest_userOPEN
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data

Authors

Author affiliations
Istituto Zooprofilattico Sperimentale 'G. Caporale', Viral Foreign Deseases of Animals

Alignment states and QC metrics

Completeness
99.38%
Length
10962
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
491
Total stop codons
0
Total unknown nucs
1

Sample details

Collection subdivision level 1
Veneto
Collection subdivision level 2
Europe
Collection country
Italy
Collection date
2023-08-24
Isolate name
TE.19712.2.3

Host

Host name scientific
Culex pipiens
Host taxon id
7175

INSDC

INSDC accession
PP104379.1
NCBI release date
2024-02-02
NCBI update date
2024-02-02

Lineage

Lineage
1A

Nucleotide mutations

Substitutions

  • C95T
  • A156T
  • G168A
  • T195A
  • C210T
  • G219A
  • T234C
  • C282T
  • G354A
  • G447T
  • T477C
  • C483T
  • G492A
  • G495T
  • T510C
  • C561T
  • C600T
  • T606C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Substitutions

    NS1

  • NS1:H65R
  • NS1:A70S
  • NS1:D310E
  • NS1:D341N

    • NS2A

  • NS2A:R122H

    • NS2B

  • NS2B:V103A

    • NS3

  • NS3:T356I

    • NS4A

  • NS4A:A85I

    • NS4B

  • NS4B:E249D

    • NS5

  • NS5:K432R

    • env

  • env:R93K
  • env:I126T
  • env:V159I
  • env:L167F
  • env:F274L
    • Deletions
    None
    Insertions
    None