accessionVersion	accession	version	submissionId	isRevocation	submitter	groupName	groupId	submittedAtTimestamp	submittedDate	releasedAtTimestamp	releasedDate	dataUseTerms	dataUseTermsRestrictedUntil	dataBecameOpenAt	dataUseTermsUrl	versionStatus	versionComment	pipelineVersion	ampliconPcrPrimerScheme	ampliconSize	anatomicalMaterial	anatomicalPart	assemblyReferenceGenomeAccession	authorAffiliations	authors	bioprojectAccession	biosampleAccession	bodyProduct	breadthOfCoverage	cellLine	collectionDevice	collectionMethod	comment	completeness_L	completeness_M	completeness_S	consensusSequenceSoftwareName	consensusSequenceSoftwareVersion	cultureId	dehostingMethod	depthOfCoverage	diagnosticMeasurementMethod	diagnosticMeasurementUnit	diagnosticMeasurementValue	diagnosticTargetGeneName	diagnosticTargetPresence	displayName	earliestReleaseDate	environmentalMaterial	environmentalSite	experimentalSpecimenRoleType	exposureDetails	exposureEvent	exposureSetting	foodProduct	foodProductProperties	frameShifts_L	frameShifts_M	frameShifts_S	gcaAccession	geoLocAdmin1	geoLocAdmin2	geoLocCity	geoLocCountry	geoLocLatitude	geoLocLongitude	geoLocSite	hostAge	hostAgeBin	hostDisease	hostGender	hostHealthOutcome	hostHealthState	hostNameCommon	hostNameScientific	hostOriginCountry	hostRole	hostTaxonId	hostVaccinationStatus	insdcAccessionBase_L	insdcAccessionBase_M	insdcAccessionBase_S	insdcAccessionFull_L	insdcAccessionFull_M	insdcAccessionFull_S	insdcRawReadsAccession	insdcVersion_L	insdcVersion_M	insdcVersion_S	isLabHost	length_L	length_M	length_S	ncbiReleaseDate	ncbiSourceDb	ncbiSubmitterCountry	ncbiUpdateDate_L	ncbiUpdateDate_M	ncbiUpdateDate_S	ncbiVirusName	ncbiVirusTaxId	pairedEndInsertSize	passageMethod	passageNumber	presamplingActivity	previousInfectionDisease	previousInfectionOrganism	purposeOfSampling	purposeOfSequencing	qualityControlDetails	qualityControlDetermination	qualityControlIssues	qualityControlMethodName	qualityControlMethodVersion	rawSequenceDataProcessingMethod	sampleCollectionDate	sampleCollectionDateRangeLower	sampleCollectionDateRangeUpper	sampleReceivedDate	sampleType	sequencedByContactEmail	sequencedByContactName	sequencedByOrganization	sequencingAssayType	sequencingDate	sequencingInstrument	sequencingLibrarySelection	sequencingLibrarySource	sequencingProtocol	signsAndSymptoms	specimenCollectorSampleId	specimenProcessing	specimenProcessingDetails	stopCodons_L	stopCodons_M	stopCodons_S	totalAmbiguousNucs_L	totalAmbiguousNucs_M	totalAmbiguousNucs_S	totalDeletedNucs_L	totalDeletedNucs_M	totalDeletedNucs_S	totalFrameShifts_L	totalFrameShifts_M	totalFrameShifts_S	totalInsertedNucs_L	totalInsertedNucs_M	totalInsertedNucs_S	totalSnps_L	totalSnps_M	totalSnps_S	totalStopCodons_L	totalStopCodons_M	totalStopCodons_S	totalUnknownNucs_L	totalUnknownNucs_M	totalUnknownNucs_S	travelHistory	rawReads	annotations
PP_00843Q0.1	PP_00843Q0	1	Run_1321_BC89	false	dnieuw	ErasmusMC Viroscience	1717	1793637947	2026-11-02	1793649875	2026-11-02	RESTRICTED	2027-11-02		https://pathoplexus.org/about/terms-of-use/restricted-data	LATEST_VERSION		9	modified ANDV ARTIC protocol V.4	400				Department of Viroscience, Erasmus University Medical Center, Rotterdam, the Netherlands	Oude Munnink, B. B.; Nieuwenhuijse, D. F.; van den Boom, S. C.; Zaeck, L.; Boter, M.; Cassidy, H.; Schuele, L.; Molenkamp, R.; van der Eijk, A.; GeurtsvanKessel, C.; Koopmans, M.								Case 12	0.9798841816519354	0.952056660310542	0.9363976483164084	ARTIC field bioinformatics pipeline (https://github.com/artic-network/fieldbioinformatics)										Netherlands/Run_1321_BC89/2026-05-22	2026-11-02													Zuid-Holland	Rotterdam	Rotterdam	Netherlands										human	Homo sapiens			9606													6430	3495	1756															Outbreak investigation	Outbreak investigation							2026-05-22	2026-05-22	2026-05-22		Serum			Erasmus MC			GridION			The design comprised 62 overlapping primers generating ~400 bp amplicons in two pools. A third pool contained three L-segment amplicons targeting outbreak-specific SNPs to increase sensitivity for outbreak specimens. Random priming used 65°C for 5 min followed by 2 min snap cooling at 4°C. cDNA was synthesized with SuperScript IV (Invitrogen, Carlsbad, USA) at 23°C for 10 min, 54°C for 15 min and 80°C for 10 min. Tiled ANDV amplification followed a modified ARTIC protocol V.4 (https://dx.doi.org/10.17504/protocols.io.bp2l6n26rgqe/v4), using the Q5 High-Fidelity DNA Polymerase Kit (Integrated DNA Technologies, Coralville, USA) in 50 µl reactions: 98°C for 30 s, then 38 cycles of 98°C for 15 s and 65°C for 5 min. Libraries were prepared from 100 ng input with the Native Barcoding Kit 24 v14 (SQK-NBD114.24) and sequenced on an R10.4.1 flow cell (FLO-PRO114M). Reads were base called with Dorado v.5.2 at super high accuracy, requiring barcodes at both ends (all Oxford Nanopore Technologies, Oxford, UK).								0	0	0	0	0	2	0	0	0	0	0	6	386	206	127	0	0	0	0	0	0			"[{""fileId"":""FILE_00A04S1"",""name"":""PP_00843Q0.1.embl"",""url"":""https://pathoplexus.org/seq/PP_00843Q0.1/annotations/PP_00843Q0.1.embl""}]"