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PP_006W001.2	PP_006W001	2	MN258188.1.L/MN258222.1.M/MN258256.1.S	false	arthurshem_curator	Automated Ingest from INSDC/NCBI Virus by Loculus	1	1779162345	2026-05-19	1779173084	2026-05-19	OPEN		2026-05-09	https://pathoplexus.org/about/terms-of-use/open-data	LATEST_VERSION	https://github.com/pathoplexus/curation_reports/issues/21#issuecomment-4466642240	1						United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences	Martinez, V. P.; Perez-Sautu, U.; Alonso, D. O.; Di Paola, N.; Bellomo, C. M.; Iglesias, A. A.; Coelho, R. M.; Periolo, N.; Nagle, E. R.; Chitty, J. A.; Pratt, C. B.; Wiley, M. R.; Diaz, J.; Biondo, E.; Lewis, L.; Anselmo, C.; Pontoriero, F.; Lavarra, E.; Kuhn, J. H.; Sanchez-Lockhart, M.; Edelstein, A.; Cisterna, D.; Campos, J.; Kaler, M.; Rubinstein, A.; Perandones, C.; Palacios, G.; Iglesias, A.; Pratt, C.									0.9980188966778422	0.9972759466085536	0.9951897381079636	SPAdes	3.9.0.5		Bowtie 2.4							Argentina/PP_006W001.2/2018-12-14	2020-09-30				Host role - Other: Wife	Exposure to human patient	Home							Chubut	Esquel	Esquel	Argentina				43.0	40 - 49	Hantavirus Pulmonary Syndrome	Female	Survived		human	Homo sapiens	Argentina	Exposed Patient	9606		MN258188	MN258222	MN258256	MN258188.1	MN258222.1	MN258256.1		1	1	1		6549	3669	1868	2020-09-30	GenBank					Orthohantavirus andesense	1980456						Outbreak	Outbreak						Trimmomatic 0.381;Cutadapt2;Prinseq-lite 0.20.43	2018-12-14	2018-12-14	2018-12-14		Whole blood							RNA was extracted from 400 µl of whole blood in TRIzol LS reagent using the TRIzol™ Reagent and Phasemaker™ Tubes Complete System (ThermoFisher Scientific, Waltham, MA, USA) following the manufacturer’s protocol. RNA sequencing libraries were prepared using the KAPA RNA HyperPrep kit (KAPA Biosystems, Wilmington, MA, USA) following the manufacturer’s guidelines. Unique dual-index pairs were used for library indexing with xGen Dual Index UMI Adaptors (Integrated DNA Technologies, Skokie, IL, USA), which also served as a control against contamination. Following library preparation, the Illumina TruSeq RNA Exome enrichment reagents were used with a custom ANDV-specific biotinylated probe set (Twist Biosciences, San Francisco, CA, USA) in singleplex reactions following the manufacturer’s recommendations. The probe set included 3,822 unique probes of 120-nt in length for enrichment of the libraries for ANDV-specific sequences. Pooled libraries were sequenced on the Illumina (San Diego, CA) MiSeq or NextSeq sequenc		Epuyen/18-19_Patient_9_12/12/18						0	0	0	0	0	2	0	0	0	0	8	7	377	209	118	0	0	0	0	0	1