PP_006JFM1.1

DENV-2/Australia/QLD_7156S_2025/2025
K. Thompson, S. Lyons, K. Malone, J. Fryk, A. T. Pyke, K. Murton, C. Tran, H. Gauld, D. Hamshere, T. Lee, N. Poudel, W. Wang, K. Ignacio, C. Pardo, J. Arikkatt, J. Tickner & G. Hewitson

Public and Environmental Health Reference Laboratories, Public Health Virology

Sample details

Collection date
2025
Sampling location
Australia (Queensland)
Isolate name
QLD_7156S_2025

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-12 09:55insdc_ingest_userOPEN
Data use terms URL

INSDC

INSDC accession
NCBI release date
2026-02-26
NCBI update date
2026-02-26

Host

Host
Host name - scientific
Homo sapiens

Submission details

Submission ID
PX945877.1
Submitting group
Date submitted
2026-03-12 09:53:22 UTC
Date released
2026-03-12 10:35:01 UTC
Earliest release date
2026-02-26

Lineage & Serotype

Lineage
2II_D.4
Serotype
DENV-2

Alignment and QC

Length
10456 (97.2%)
# of SNPs
791
# of ambiguous bases
2
# of unknown bases
26

Nucleotide mutations

Mutations called relative to the NC_001474.2 reference

Substitutions

  • A78T
  • A122G
  • C126T
  • A177G
  • G210A
  • A228G
  • C243T
  • G252A
  • A276G
  • G297A
  • T312C
  • T330C
  • T336C
  • T360C
  • T384C
  • T397A
  • G408A
  • C411T
Deletions
N/A
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_001474.2 reference

Substitutions

C

  • C:K9R
  • C:S101T
  • C:M104I
  • C:L108M

E

  • E:M6I
  • E:Q52H
  • E:E71A
  • E:R120T
  • E:V129I
  • E:H149N
  • E:K160E
  • E:I164V
  • E:N390S
  • E:I462V
  • E:T478S
  • E:I484V

NS1

  • NS1:I21V
  • NS1:I96V
  • NS1:T117A
  • NS1:S128L
  • NS1:H129Y
  • NS1:Q131H
  • NS1:K174R
  • NS1:V220I
  • NS1:N222S
  • NS1:L247F
  • NS1:I264T
  • NS1:T265A
  • NS1:K272R
  • NS1:D281E

NS2A

  • NS2A:V5I
  • NS2A:T25S
  • NS2A:M136I
  • NS2A:T189A

NS2B

  • NS2B:L21F
  • NS2B:K60R
  • NS2B:D63E

NS3

  • NS3:M13V
  • NS3:N119T
  • NS3:A120T
  • NS3:I140V
  • NS3:A160T
  • NS3:R186K
  • NS3:V273I
  • NS3:I333M
  • NS3:V395I
  • NS3:I461V

NS4A

  • NS4A:D23N
  • NS4A:R76K

NS4B

  • NS4B:L13F
  • NS4B:A19T
  • NS4B:V48I
  • NS4B:I150M
  • NS4B:T244A

NS5

  • NS5:I5T
  • NS5:S15N
  • NS5:M70L
  • NS5:I135T
  • NS5:R246K
  • NS5:Y247H
  • NS5:I271T
  • NS5:V334I
  • NS5:V335I
  • NS5:R430G
  • NS5:E558V
  • NS5:K570Q
  • NS5:G605V
  • NS5:H634Q
  • NS5:I637V
  • NS5:Q644K
  • NS5:N645D
  • NS5:I687V
  • NS5:K800T
  • NS5:A865T

prM

  • prM:G7N
  • prM:K16R
  • prM:R19K
  • prM:S28E
  • prM:A29N
  • prM:I37M
  • prM:M49I
  • prM:K52N
  • prM:R55L
  • prM:I56L
  • prM:T57R
  • prM:E58Q
  • prM:T59N
  • prM:D62E
  • prM:V64I
  • prM:A70S
  • prM:E72S
  • prM:S81T
Deletions
N/A
Insertions
N/A

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