PP_006HD9W.1

DENV-1/Kenya/TUM_F17/2025-01-16
S. K. Langat, S. Kageha, V. Jeza, G. Pilarowski, A. Nyunja, V. Ofula, P. E. Oluniyi, J. Gil, N. Ogada, L. Gande, J. Thiiru, S. Okeyo, P. Bulia, J. Amugongo, C. M. Tato, F. Mutuku, S. Khamadi, J. Lutomiah & S. Limbaso

Kenya Medical Research Institute (KEMRI), Centre for Virus Research

Sample details

Collection date
2025-01-16
Sampling location
Kenya
Isolate name
TUM_F17

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-12 09:55insdc_ingest_userOPEN
Data use terms URL

INSDC

INSDC accession
NCBI release date
2025-06-07
NCBI update date
2025-06-07

Host

Host
Host name - scientific
Homo sapiens

Submission details

Submission ID
PV717358.1
Submitting group
Date submitted
2026-03-12 09:53:22 UTC
Date released
2026-03-12 10:34:00 UTC
Earliest release date
2025-06-07

Lineage & Serotype

Lineage
1III_A.2
Serotype
DENV-1

Alignment and QC

Length
10653 (99.4%)
# of SNPs
856
# of deleted bases
21

Nucleotide mutations

Mutations called relative to the NC_001477.1 reference

Substitutions

  • A112G
  • T171G
  • T208C
  • T230A
  • T244C
  • T274C
  • G302A
  • C328T
  • G340A
  • G349A
  • A355G
  • A363G
  • T368C
  • T397C
  • C412T
  • T442C
  • C443T
  • C451A
Deletions

10296-10311, 10318-10322
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_001477.1 reference

Substitutions

C

  • C:V26G
  • C:L46M
  • C:G70S
  • C:N90S

E

  • E:D37N
  • E:T88A
  • E:I114L
  • E:T161I
  • E:K203E
  • E:I293T
  • E:M297V
  • E:F337I
  • E:S339T
  • E:A369T
  • E:V380I
  • E:V428M
  • E:I436V
  • E:I439V

NS1

  • NS1:V89I
  • NS1:V93A
  • NS1:S94N
  • NS1:A98T
  • NS1:V128T
  • NS1:N139D
  • NS1:N146D
  • NS1:I162V
  • NS1:V178M
  • NS1:K227R
  • NS1:D278N
  • NS1:H290R
  • NS1:T307I
  • NS1:K324R
  • NS1:K347R

NS2A

  • NS2A:I15V
  • NS2A:L41F
  • NS2A:T44I
  • NS2A:A64V
  • NS2A:K67R
  • NS2A:R82K
  • NS2A:V106I
  • NS2A:A147T
  • NS2A:V155I
  • NS2A:F159L
  • NS2A:H162D
  • NS2A:I171V
  • NS2A:L199F

NS2B

  • NS2B:K55R
  • NS2B:I106V

NS3

  • NS3:E43D
  • NS3:A91T
  • NS3:A112T
  • NS3:R185K
  • NS3:V221I
  • NS3:Y349H
  • NS3:V384I
  • NS3:V452A

NS4A

  • NS4A:R76K
  • NS4A:I89M
  • NS4A:A93V

NS4B

  • NS4B:A18V
  • NS4B:A19V
  • NS4B:A27T
  • NS4B:V31I
  • NS4B:K212R

NS5

  • NS5:I34M
  • NS5:L123I
  • NS5:K130R
  • NS5:I181V
  • NS5:V270I
  • NS5:K364R
  • NS5:A365P
  • NS5:R378K
  • NS5:E559Q
  • NS5:N585S
  • NS5:A616V
  • NS5:T635N
  • NS5:P636S
  • NS5:V642A
  • NS5:K647E
  • NS5:T651V
  • NS5:I669T
  • NS5:F881Y

prM

  • prM:S15T
  • prM:T59A
  • prM:E72D
  • prM:K118R
Deletions
N/A
Insertions
N/A

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