accessionVersion	accession	version	submissionId	isRevocation	submitter	groupName	groupId	submittedAtTimestamp	submittedDate	releasedAtTimestamp	releasedDate	dataUseTerms	dataUseTermsRestrictedUntil	dataBecameOpenAt	dataUseTermsUrl	versionStatus	versionComment	pipelineVersion	ampliconPcrPrimerScheme	ampliconSize	anatomicalMaterial	anatomicalPart	assemblyReferenceGenomeAccession	authorAffiliations	authors	bioprojectAccession	biosampleAccession	bodyProduct	breadthOfCoverage	cellLine	clade	collectionDevice	collectionMethod	comment	completeness	consensusSequenceSoftwareName	consensusSequenceSoftwareVersion	cultureId	dehostingMethod	depthOfCoverage	diagnosticMeasurementMethod	diagnosticMeasurementUnit	diagnosticMeasurementValue	diagnosticTargetGeneName	diagnosticTargetPresence	displayName	earliestReleaseDate	environmentalMaterial	environmentalSite	experimentalSpecimenRoleType	exposureDetails	exposureEvent	exposureSetting	foodProduct	foodProductProperties	frameShifts	gcaAccession	geoLocAdmin1	geoLocAdmin2	geoLocCity	geoLocCountry	geoLocLatitude	geoLocLongitude	geoLocSite	gisaidIsolateId	hostAge	hostAgeBin	hostDisease	hostGender	hostHealthOutcome	hostHealthState	hostNameCommon	hostNameScientific	hostOriginCountry	hostRole	hostTaxonId	hostVaccinationStatus	insdcAccessionBase	insdcAccessionFull	insdcRawReadsAccession	insdcVersion	isLabHost	length	lineage	ncbiReleaseDate	ncbiSourceDb	ncbiSubmitterCountry	ncbiUpdateDate	ncbiVirusName	ncbiVirusTaxId	outbreak	passageMethod	passageNumber	presamplingActivity	previousInfectionDisease	previousInfectionOrganism	purposeOfSampling	purposeOfSequencing	qualityControlDetails	qualityControlDetermination	qualityControlIssues	qualityControlMethodName	qualityControlMethodVersion	rawSequenceDataProcessingMethod	sampleCollectionDate	sampleCollectionDateRangeLower	sampleCollectionDateRangeUpper	sampleReceivedDate	sampleType	sequencedByContactEmail	sequencedByContactName	sequencedByOrganization	sequencingAssayType	sequencingDate	sequencingInstrument	sequencingProtocol	signsAndSymptoms	specimenCollectorSampleId	specimenProcessing	specimenProcessingDetails	stopCodons	totalAmbiguousNucs	totalDeletedNucs	totalFrameShifts	totalInsertedNucs	totalSnps	totalStopCodons	totalUnknownNucs	travelHistory
PP_004JQPQ.1	PP_004JQPQ	1	VIDO_CIb_P1	false	jaudet	SP_NML_PHAC	397	1770750198	2026-02-10	1770750398	2026-02-10	OPEN		2026-02-10	https://pathoplexus.org/about/terms-of-use/open-data	LATEST_VERSION		20						Vaccine and Infectious Disease Organization, Canada; Institut National de Recherche Biomédicale, Democratic Republic of the Congo; Vaccine and Infectious Disease Organization, Canada; National Microbiology Laboratory, Canada; National Microbiology Laboratory, Canada	Moni, Benedicte Mpia; Mbala-Kingebeni, Placide; Banerjee, Arinjay; Chan, Mable; Audet, Jonathan	PRJEB87374	SAMEA121347072			Vero E6	Ib				0.9965315984564599											Canada/PP_004JQPQ.1/2024-12	2026-02-10									OPG003:4-589(nt:2841-4598),OPG047:477-483(nt:29746-29766),OPG050:71-76(nt:33181-33198),OPG153:370-371(nt:136556-136560),OPG164:229(nt:143460-143464),OPG180:556-560(nt:154356-154371),OPG191:167-169(nt:166658-166667),OPG003_dup:4-589(nt:192612-194369)	GCA_979576895.1				Canada																	OZ412016	OZ412016.1				194713	None							sh2023														2024-12	2024-12-01	2024-12-31	2024-12-01						2025-02-05	MinION	Genomes were generated through amplicon sequencing of 5 kb amplicons with Isabel schema primers. Libraries were created using the Oxford Nanopore SQK-NBD114.24 Native Barcoding Kit and sequenced on a MinION Mk1B and R10.4.1 flowcell. Missing amplicons were amplified individually and sequenced with the same protocol. Reads were aligned to NC_003310.1 using nf-ViralMutations.						0	3278	8	1466	854	0	0