PP_00339ZH.1

USA/PP_00339ZH.1/2023-09-19
Shawn Freed Jr, Sarah Chandler, Sarah Uhm, Dikchha Gurung, Ava Butz, Kaylee Herzog & Joseph R. Fauver

University of Nebraska Medical Center

Sample details

Collection date
2023-09-19
Sampling location
USA (Douglas, Nebrsaka)

Data use terms

Data use terms
OPEN
Data use terms URL

Lineage

Lineage
1A

Host

Host

Sequencing

Sequencing instrument
Illumina NovaSeq
Sequencing protocol
IDT xGen WNV

Submission details

Submission ID
UNMC0730
Submitting group
Date submitted
2025-08-14 03:45:22 UTC
Date released
2025-08-14 03:46:21 UTC
Earliest release date
2025-08-14

Alignment and QC

Length
10260 (93%)
# of SNPs
114

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions
  • C340T
  • C435T
  • T513C
  • A630G
  • G741A
  • T928C
  • C1050T
  • C1242T
  • T1368C
  • T1442C
  • C1465T
  • G1662A
  • G1680A
  • C1750T
  • C2109T
  • C2304T
  • C2316T
  • T2400C
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS1

  • NS1:I236V

NS2A

  • NS2A:R188K

NS3

  • NS3:D141N
  • NS3:A177V
  • NS3:S467L

NS4B

  • NS4B:V112I
  • NS4B:I240M

NS5

  • NS5:T25I

env

  • env:V159A
  • env:L167F

prM

  • prM:F155L
Deletions
N/A
Insertions
N/A

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