PP_00339CS.2

Display Name: USA/PP_00339CS.2/2023-08-22
Shawn Freed Jr, Sarah Chandler, Sarah Uhm, Dikchha Gurung, Ava Butz, Kaylee Herzog & Joseph R. Fauver

Sample details

Collection date
2023-08-22
Country
USA
Admin level 1
Nebrsaka
Admin level 2
Hall

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-08-20 01:57josephfauverOPEN
2025-08-14 03:45josephfauverRESTRICTED until 2026-08-13
Data use terms URL

Lineage

Lineage
1A

Authors

Author affiliations
University of Nebraska Medical Center

Host

Host name - scientific
Culex tarsalis

Sequencing

Sequencing instrument
Illumina NovaSeq
Sequencing protocol
IDT xGen WNV

Alignment and QC metrics

Length
10260
Completeness
93.03%
# of SNPs
109
# of inserted bases
0
# of deleted bases
0
# of ambiguous bases
0
# of unknown bases
0
# of frame shifts
0
# of stop codons
0

Submission details

Submission ID
UNMC0704
Submitting group
Date submitted
2025-08-20 01:54:50 UTC
Date released
2025-08-20 01:56:35 UTC
Earliest release date
2025-08-14

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • G279T
  • A288G
  • A630G
  • T642C
  • T935C
  • C1353T
  • T1368C
  • A1401G
  • T1442C
  • C1465T
  • A1518T
  • T1965C
  • C2010T
  • A2097C
  • C2187A
  • C2371T
  • C2466T
  • C2472T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS2A

  • NS2A:T52I
  • NS2A:L95F
  • NS2A:H119Y

    • NS2B

  • NS2B:L24F

    • NS3

  • NS3:S334T

    • NS4B

  • NS4B:S14I
  • NS4B:F32L

    • NS5

  • NS5:R422K
  • NS5:S661N

    • env

  • env:V159A
  • env:L167F

    • prM

  • prM:V157A
    • Deletions
    None
    Insertions
    None

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