PP_003399Y.1

Display Name: USA/PP_003399Y.1/2023-08-22
Shawn Freed Jr, Sarah Chandler, Sarah Uhm, Dikchha Gurung, Ava Butz, Kaylee Herzog & Joseph R. Fauver

Sample details

Collection date
2023-08-22
Country
USA
Admin level 1
Nebrsaka
Admin level 2
Dawson

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-08-20 01:57josephfauverOPEN
2025-08-14 03:45josephfauverRESTRICTED until 2026-08-13
Data use terms URL

Lineage

Lineage
1A

Authors

Author affiliations
University of Nebraska Medical Center

Host

Host name - scientific
Culex tarsalis

Sequencing

Sequencing instrument
Illumina NovaSeq
Sequencing protocol
IDT xGen WNV

Alignment and QC metrics

Length
10260
Completeness
92.18%
# of SNPs
105
# of inserted bases
0
# of deleted bases
0
# of ambiguous bases
0
# of unknown bases
94
# of frame shifts
0
# of stop codons
0

Submission details

Submission ID
UNMC0701
Submitting group
Date submitted
2025-08-14 03:45:22 UTC
Date released
2025-08-14 03:46:21 UTC
Earliest release date
2025-08-14

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A202G
  • C340T
  • T348C
  • C435T
  • A459G
  • A630G
  • C708T
  • C804T
  • G855A
  • T1224C
  • T1442C
  • C1465T
  • C1473T
  • G1662A
  • C1750T
  • C1893T
  • T1971C
  • C2109T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS2A

  • NS2A:V75I
  • NS2A:R188K

    • NS3

  • NS3:S421N

    • NS4B

  • NS4B:I240M
  • NS4B:E249G

    • NS5

  • NS5:K314R
  • NS5:R422K

    • capsid

  • capsid:S36G

    • env

  • env:V159A
  • env:L167F
    • Deletions
    None
    Insertions
    None

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