PP_00338R0.1

Display Name: USA/PP_00338R0.1/2023-07-17
Shawn Freed Jr, Sarah Chandler, Sarah Uhm, Dikchha Gurung, Ava Butz, Kaylee Herzog & Joseph R. Fauver

Sample details

Collection date
2023-07-17
Country
USA
Admin level 1
Nebrsaka
Admin level 2
Box Butte

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-08-20 01:57josephfauverOPEN
2025-08-14 03:45josephfauverRESTRICTED until 2026-08-13
Data use terms URL

Lineage

Lineage
1A

Authors

Author affiliations
University of Nebraska Medical Center

Host

Host name - scientific
Culex tarsalis

Sequencing

Sequencing instrument
Illumina NovaSeq
Sequencing protocol
IDT xGen WNV

Alignment and QC metrics

Length
10260
Completeness
93.03%
# of SNPs
103
# of inserted bases
0
# of deleted bases
0
# of ambiguous bases
0
# of unknown bases
0
# of frame shifts
0
# of stop codons
0

Submission details

Submission ID
UNMC0680
Submitting group
Date submitted
2025-08-14 03:45:22 UTC
Date released
2025-08-14 03:46:21 UTC
Earliest release date
2025-08-14

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C340T
  • T384C
  • C435T
  • A630G
  • C687T
  • A1217G
  • T1442C
  • C1465T
  • G1662A
  • C1750T
  • T1755C
  • C1926T
  • C2109T
  • C2304T
  • T2391C
  • T2412C
  • C2440T
  • C2466T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS1

  • NS1:I236V

    • NS2A

  • NS2A:R188K

    • NS4B

  • NS4B:I240M

    • NS5

  • NS5:S661N

    • env

  • env:K84R
  • env:V159A
  • env:L167F
    • Deletions
    None
    Insertions
    None

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