PP_003370J.1

Display Name: USA/PP_003370J.1/2023-07-31
Shawn Freed Jr, Sarah Chandler, Sarah Uhm, Dikchha Gurung, Ava Butz, Kaylee Herzog & Joseph R. Fauver

Sample details

Collection date
2023-07-31
Country
USA
Admin level 1
Nebrsaka
Admin level 2
Box Butte

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-08-20 01:57josephfauverOPEN
2025-08-14 03:45josephfauverRESTRICTED until 2026-08-13
Data use terms URL

Lineage

Lineage
1A

Authors

Author affiliations
University of Nebraska Medical Center

Host

Host name - scientific
Culex tarsalis

Sequencing

Sequencing instrument
Illumina NovaSeq
Sequencing protocol
IDT xGen WNV

Alignment and QC metrics

Length
9804
Completeness
78.54%
# of SNPs
87
# of inserted bases
0
# of deleted bases
0
# of ambiguous bases
0
# of unknown bases
1142
# of frame shifts
0
# of stop codons
0

Submission details

Submission ID
UNMC0521
Submitting group
Date submitted
2025-08-14 03:45:22 UTC
Date released
2025-08-14 03:46:21 UTC
Earliest release date
2025-08-14

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C340A
  • T348C
  • C435T
  • A630G
  • T1149C
  • G1191A
  • C1266T
  • C1302T
  • C1377T
  • A1401G
  • T1442C
  • C1465T
  • T1656C
  • T1965C
  • C1974T
  • C2025T
  • G2364A
  • C2371T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS1

  • NS1:I236V

    • NS2A

  • NS2A:T52I
  • NS2A:L95F
  • NS2A:H119Y

    • NS3

  • NS3:S334T

    • NS4B

  • NS4B:S14I

    • capsid

  • capsid:L82M

    • env

  • env:V159A
  • env:L167F
    • Deletions
    None
    Insertions
    None

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