PP_00336P6.1

USA/PP_00336P6.1/2023-07-24
Shawn Freed Jr, Sarah Chandler, Sarah Uhm, Dikchha Gurung, Ava Butz, Kaylee Herzog & Joseph R. Fauver

University of Nebraska Medical Center

Sample details

Collection date
2023-07-24
Sampling location
USA (Dodge, Nebrsaka)

Data use terms

Data use terms
OPEN
Data use terms URL

Lineage

Lineage
1A

Host

Host

Sequencing

Sequencing instrument
Illumina NovaSeq
Sequencing protocol
IDT xGen WNV

Submission details

Submission ID
UNMC0456
Submitting group
Date submitted
2025-08-14 03:45:22 UTC
Date released
2025-08-14 03:46:21 UTC
Earliest release date
2025-08-14

Alignment and QC

Length
10260 (93%)
# of SNPs
110

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions
  • T232C
  • A288G
  • G537A
  • A630G
  • C693T
  • C849T
  • A939G
  • T1000C
  • A1287G
  • C1329T
  • T1368C
  • A1401G
  • T1442C
  • C1465T
  • G1854A
  • C1893T
  • T1965C
  • C1974T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS1

  • NS1:T105P

NS2A

  • NS2A:T52I
  • NS2A:L95F
  • NS2A:H119Y

NS3

  • NS3:S334T

NS4B

  • NS4B:S14I
  • NS4B:S28G

NS5

  • NS5:R422K

capsid

  • capsid:F46L

env

  • env:V159A
  • env:L167F
Deletions
N/A
Insertions
N/A

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